SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8399

Length: 2309 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene8399
ATGGGGGTATGTGTAAAGATAAATAACATCAGGCTCCTACAGCAGGCCGGGAGAGATTCTCATTTGGTTTAAGAAATCGTTTAGTATTATTATCGCAAAGCGTCGTCCCAACGATTTGAGTCAAATTTGTGAAGTGCACTCACAGAAGGAAGACTCCAACACGCGACACCCATTCGATTCCGGAGAGAGTTTTCAGTATTTTGTTATTTGTGAGGTATTTTTTTTACATAGTTGGGTTTCAGAAGCAGTGTTGGGGATTTGGTTTGGATGACGCCTCGCAATTGAATTGAATTGAAAGGCATAAACAGAGATGCAGAACGCGGACATTTTCAATGCTGCCACAGCTCCTCTAACTTTTCATGACTTTCTGGAGCGTATGCGCCATCCGTCCGCAGCAGATCTCGTTCGCTCTATCAAAAGCTTTATTGTATCATTCTCAAGCAATGCCCCTAATCCAGAAAGAGACAGTAGGAGTGTACAAGAGTTCCTCATCACCATGGAGGAAGCTTTCAGGGCTCATCCTTTATGGGCTGGTGCAACAGAAGACGAACTTGATAGTGCTGGAGAGGGTCTGGAGAAATATCTAATGACTAAATTGTTTAACCATGCTTTTGGATCACTTCCAGAAGATGCAAAGCATGACCAGGAACTTTCAGAAAAGATGAGCTTAGTGCAACAGTTCATCCGACCAGAACATTTGGATATACAACCAAACTTTCAAAATGAAACGTCCTGGCTGCTTGCACAGAAGGAGTTGCAGAAAATTAATACATACAAGGCTCCTCGAGATAAGTTAGTTTGCATTCTCAACTGTTGCAGAGTTATAAATAACTTATTACTAAATGTGTCCATGGCAACAAATGACAATCCTCCAGGAGCTGATGATTTTCTTCCTGTACTAATCTATGTGACAATCAAGGCAAACCCTCCTCAGTTGCATTCAAATCTTTTGTATATCCAGCAATACAGGCGACAGTCTCGGCTAGTCTCTGAAGCGGCATACTTCTTTACTAATTTGGTATCTGCGGAGTCCTTCATTAAAAATATGGATGCCAAGTCTCTTTCAATGGACGAAAGAGAATTTGAAAAGAGCATGCAAACAGCAAAGTTGCTTTTTAAATGGTACTACAAGTCATGTCAACTATCCTGCAAATCATTCTTCTGCAGAAGCAGTGCAATTCATGTCGGAATCTACTATACCAAAGATGCAAGTACACAAATTACATCAAAAGGAAGGAAATGAAGAACTCCAACCTCTAGGTGAATATCAAGCTAGTAGAATGTCGGCAAAACAACCTCCAGTATCTATTGGAAAGATGGACCAGAGTAATGAAGCATATGCCAAGGACAGTTCAGAAGCAAGTAGAATGTCAGTACAAAAACTAGAAGAGAAAGAAGCTGCTGCAGTGTTACATGCAGCTCATACTGGTCAATTAATTCGAGAATATCCCTTCTTGTATGCAAGTGCTGGGGATTTGAGGGTGGAAGATGTTGAAACATTGCTTATTGCTTACAAAGAACTTGTACTAAAATATGTTTCACTTTCAAAAGCAGTAGAGAGTTCATCATCACATAAGGGCCAGTTTGCATTTAAAGGTGATGTACAGTCAAGGAAGGCTGACTTAGATGTCTCCAAGAAAGAAAGAGATCGGAATGATCAGAAAACCATGTCAGCACCTACTTTGTCTACAATGAATGAAGGTAGTGGAGGGTCAGACATCAAGCATTCTAGTCAGGAATTGTTAAAAAATATTGATGAAGATGGCCTTCAATTGGGTTTGGAATCGGATCATTCAGAGAGTCAATTTCTCTCCAGTGGTCCAAGAGATATGAATGGTGAAGTTCCTGCATCTGACAGAATAAAAACAATAGTTATGGAAGTTACTGCTCTTTTGAATGAAGTTGGTTCTGGAGTTGATCATGGCACAGAGAATGAAAGTGCTGGGGATGCAGTGTCAGTATCAGATTCTGACAATGTATTGCCAACTGTAGGTGAACAATCGTCTGTAACTTCTGCAGAAATGACACTCTCTGAAGTAGCTTCATCAAATGAAAAGGGCAATGAAGGTCTGTAAAATGTATACATTTTTGGTGTATTCATATCTGGGGGTATGTTATAAACTGAATTTTATTTAGCTTTTTTGACAGTTGTATTTTAGGGAGGCTTTCTTATGTTCTGTTAAATATATCCGGCTAATGGCAGCTTACTGTTCCTTTCATCAAAGCTGTTCGAGCATGGTATTTTATTGTATACAAATGAGTTGCATGCTTAATATTTGCAGACAATATCTTAATTGGATGGCACATTG

Ace file of the UniGene sp_v1.1_unigene8399 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Vacuolar protein sorting-associated protein VPS9, putative	-	-	75%
FL-Next	sp=Vacuolar protein sorting-associated protein 9A; Arabidopsis thaliana (Mouse-ear cress).	-	-	72%
Blast2go	protein	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	embryo development	GO:0009790	Biological Process	85%
Blast2go	cell plate assembly	GO:0000919	Biological Process	85%
Blast2go	cell wall biogenesis	GO:0042546	Biological Process	85%
Blast2go	post-embryonic root development	GO:0048528	Biological Process	85%
Blast2go	Rho guanyl-nucleotide exchange factor activity	GO:0005089	Molecular Function	85%
Blast2go	nucleus	GO:0005634	Cellular Component	85%
Blast2go	cytosol	GO:0005829	Cellular Component	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9LT31

Fln msg: Separated hits, possible frame ERROR between 1108 and 1371, your sequence is longer than subject: 589 - 520

Fln protein: MQNADIFNAATAPLTFHDFLERMRHPSAADLVRSIKSFIVSFSSNAPNPERDSRSVQEFLITMEEAFRAHPLWAGATEDELDSAGEGLEKYLMTKLFNHAFGSLPEDAKHDQELSEKMSLVQQFIRPEHLDIQPNFQNETSWLLAQKELQKINTYKAPRDKLVCILNCCRVINNLLLNVSMATNDNPPGADDFLPVLIYVTIKANPPQLHSNLLYIQQYRRQSRLVSEAAYFFTNLVSAESFIKNMDAKSLSMDEREFEKSMQTAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSVQKLEEKEAAAVLHAAHTGQLIREYPFLYASAGDLRVEDVETLLIAYKELVLKYVSLSKAVESSSSHKGQFAFKGDVQSRKADLDVSKKERDRNDQKTMSAPTLSTMNEGSGGSDIKHSSQELLKNIDEDGLQLGLESDHSESQFLSSGPRDMNGEVPASDRIKTIVMEVTALLNEVGSGVDHGTENESAGDAVSVSDSDNVLPTVGEQSSVTSAEMTLSEVASSNEKGNEGL*

Protein Length: 590

Fln nts: ATGGGGGTATGTGTAAAGATAAATAACATCAGGCTCCTACAGCAGGCCGGGAGAGATTCTCATTTGGTTTAAGAAATCGTTTAGTATTATTATCGCAAAGCGTCGTCCCAACGATTTGAGTCAAATTTGTGAAGTGCACTCACAGAAGGAAGACTCCAACACGCGACACCCATTCGATTCCGGAGAGAGTTTTCAGTATTTTGTTATTTGTGAGGTATTTTTTTTACATAGTTGGGTTTCAGAAGCAGTGTTGGGGATTTGGTTTGGATGACGCCTCGCAATTGAATTGAATTGAAAGGCATAAACAGAG_-_ATGCAGAACGCGGACATTTTCAATGCTGCCACAGCTCCTCTAACTTTTCATGACTTTCTGGAGCGTATGCGCCATCCGTCCGCAGCAGATCTCGTTCGCTCTATCAAAAGCTTTATTGTATCATTCTCAAGCAATGCCCCTAATCCAGAAAGAGACAGTAGGAGTGTACAAGAGTTCCTCATCACCATGGAGGAAGCTTTCAGGGCTCATCCTTTATGGGCTGGTGCAACAGAAGACGAACTTGATAGTGCTGGAGAGGGTCTGGAGAAATATCTAATGACTAAATTGTTTAACCATGCTTTTGGATCACTTCCAGAAGATGCAAAGCATGACCAGGAACTTTCAGAAAAGATGAGCTTAGTGCAACAGTTCATCCGACCAGAACATTTGGATATACAACCAAACTTTCAAAATGAAACGTCCTGGCTGCTTGCACAGAAGGAGTTGCAGAAAATTAATACATACAAGGCTCCTCGAGATAAGTTAGTTTGCATTCTCAACTGTTGCAGAGTTATAAATAACTTATTACTAAATGTGTCCATGGCAACAAATGACAATCCTCCAGGAGCTGATGATTTTCTTCCTGTACTAATCTATGTGACAATCAAGGCAAACCCTCCTCAGTTGCATTCAAATCTTTTGTATATCCAGCAATACAGGCGACAGTCTCGGCTAGTCTCTGAAGCGGCATACTTCTTTACTAATTTGGTATCTGCGGAGTCCTTCATTAAAAATATGGATGCCAAGTCTCTTTCAATGGACGAAAGAGAATTTGAAAAGAGCATGCAAACAGCAAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTCAGTACAAAAACTAGAAGAGAAAGAAGCTGCTGCAGTGTTACATGCAGCTCATACTGGTCAATTAATTCGAGAATATCCCTTCTTGTATGCAAGTGCTGGGGATTTGAGGGTGGAAGATGTTGAAACATTGCTTATTGCTTACAAAGAACTTGTACTAAAATATGTTTCACTTTCAAAAGCAGTAGAGAGTTCATCATCACATAAGGGCCAGTTTGCATTTAAAGGTGATGTACAGTCAAGGAAGGCTGACTTAGATGTCTCCAAGAAAGAAAGAGATCGGAATGATCAGAAAACCATGTCAGCACCTACTTTGTCTACAATGAATGAAGGTAGTGGAGGGTCAGACATCAAGCATTCTAGTCAGGAATTGTTAAAAAATATTGATGAAGATGGCCTTCAATTGGGTTTGGAATCGGATCATTCAGAGAGTCAATTTCTCTCCAGTGGTCCAAGAGATATGAATGGTGAAGTTCCTGCATCTGACAGAATAAAAACAATAGTTATGGAAGTTACTGCTCTTTTGAATGAAGTTGGTTCTGGAGTTGATCATGGCACAGAGAATGAAAGTGCTGGGGATGCAGTGTCAGTATCAGATTCTGACAATGTATTGCCAACTGTAGGTGAACAATCGTCTGTAACTTCTGCAGAAATGACACTCTCTGAAGTAGCTTCATCAAATGAAAAGGGCAATGAAGGTCTGTAA___AATGTATACATTTTTGGTGTATTCATATCTGGGGGTATGTTATAAACTGAATTTTATTTAGCTTTTTTGACAGTTGTATTTTAGGGAGGCTTTCTTATGTTCTGTTAAATATATCCGGCTAATGGCAGCTTACTGTTCCTTTCATCAAAGCTGTTCGAGCATGGTATTTTATTGTATACAAATGAGTTGCATGCTTAATATTTGCAGACAATATCTTAATTGGATGGCACATTG

Fln Alignment:

sp_v1.1_unigene8399___MQNADIFNAATAPLTFHDFLERMRHPSAADLVRSIKSFIVSFSSNAPNPERDSRSVQEFLITMEEAFRAHPLWAGATEDELDSAGEGLEKYLMTKLFNHAFGSLPEDAKHDQELSEKMSLVQQFIRPEHLDIQPNFQNETSWLLAQKELQKINTYKAPRDKLVCILNCCRVINNLLLNVSMATNDNPPGADDFLPVLIYVTIKANPPQLHSNLLYIQQYRRQSRLVSEAAYFFTNLVSAESFIKNMDAKSLSMDEREFEKSMQTAKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSVQKLEEKEAAAVLHAAHTGQLIREYPFLYASAGDLRVEDVETLLIAYKELVLKYV
Q9LT31______________MENTDVF------LGLHDFLERMRKPSAGDFVKSIKSFIVSFSNNAPDPEKDCAMVQEFFSKMEAAFRAHPLWSGCSEEELDSAGDGLEKYVMTKLFTRVFASNTEEVIADEKLFQKMSLVQQFISPENLDIQPTFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNENAPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESFISNIDAKSISLDEAEFEKNMESARxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSISDLENK-GATLLKDTEPSKVFQEYPYIFASAGDLRIGDVEGLLNSYKQLVFKYV

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
251			33	33	0.997753
371	83		16		0.994512
411		11		88	0.923564
437	87	12			0.992554
438	87	12			0.992554
440		12		87	0.992554
445			12	87	0.992554
497			85	14	0.993533
501	85			14	0.993533
504	85	14			0.993533
506			14	85	0.993533
507		14		85	0.993533
508		14	85		0.993533
510	14	85			0.993533
511			14	85	0.993533
512		85	14		0.993533
515	16			83	0.994512
516		16	83		0.994512
517	83		16		0.994512
519		16		83	0.994512
560	75	25			0.996473
1752		75		25	0.996473
1800			25	75	0.996473
1957	66			25	1.0
2061	62		37		1.0
2087	40			60	1.0
2098	20	80			0.995493
2099		40		60	1.0
2101		80	20		0.995493
2103		80	20		0.995493
2104	80			20	0.995493
2105	80		20		0.995493
2107		20		80	0.995493
2110	80	20			0.995493
2114	80		20		0.995493
2115	80		20		0.995493
2123	80	20			0.995493
2124	80		20		0.995493
2126		50	50		1.0
2199	33	33			0.997753
2200	66	33			0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
2014	2030	TTCAA TTCAA TTCAA TT	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain