SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene8176

Length: 1226 nt

Origin of reads: Biogeco_1

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene8176

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Myb n=1 Tax=Nicotiana tabacum RepID=Q948S5_TOBAC	-	-	65%
FL-Next	tr=R2R3-MYB transcription factor MYB9; Picea glauca (White spruce) (Pinus glauca).	-	-	32%
Blast2go	myb3r-4 (myb domain protein 3r-4) dna binding transcription coactivator transcription factor	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	regulation of DNA endoreduplication	GO:0032875	Biological Process	80%
Blast2go	regulation of cellular transcription, DNA-dependent	GO:0045449	Biological Process	80%
Blast2go	transcription coactivator activity	GO:0003713	Molecular Function	80%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A5JYF3

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 111 aas, your sequence is shorter than subject: 274 - 416

Fln protein: MPRLRTGTKGRMSSDDDEDFQVHCTQRRTASKKMKTPMAERPWTKKEDEVLRKNVQKFKGSDWRKIADSIKERSDVQCLQRWQKVLNPNLVKGYWTKEEDEKLAELVELFGTKRWAAIARSIPGRIGKQCRERWHNHLDPSIKKDAWTEEEEMILACAHQKLGNKWASISKLLAGRSENAVKNHWNSTAKKRASRQVVQQEEEEGGVVSSDDQGKLSIFPELEGSDPGNVDSLTDGDLSWSDDLNISSLPDNKQPDLSDPQECGCAFENFVII*

Protein Length: 275

Fln nts: ATGGGGACGACTGTGAATTCAATCTGAATTTTCATAAAGCCACCGTGATCCATTCATGTGTGGTTCTGCCAATTCATTCGTTCGATTTGAAAG_-_ATGCCGCGTCTCAGAACAGGCACGAAGGGCAGAATGTCGAGCGACGATGACGAAGACTTCCAAGTCCATTGTACTCAGCGAAGAACAGCCAGTAAGAAGATGAAAACCCCCATGGCGGAACGTCCCTGGACCAAGAAGGAGGATGAAGTGCTGAGAAAAAATGTCCAGAAATTCAAAGGGAGCGATTGGAGGAAAATTGCGGATAGTATCAAGGAGCGATCAGATGTGCAGTGCCTCCAAAGGTGGCAAAAAGTTCTGAATCCGAATCTCGTCAAGGGCTACTGGACTAAAGAGGAAGATGAGAAGCTGGCCGAGCTGGTTGAACTGTTTGGGACAAAGAGGTGGGCGGCCATTGCACGTTCTATTCCTGGTCGAATCGGCAAACAGTGCCGTGAGAGATGGCACAATCACCTTGATCCAAGTATCAAGAAGGACGCCTGGACAGAAGAAGAGGAGATGATCTTGGCCTGTGCTCACCAGAAACTGGGCAACAAGTGGGCATCCATTTCCAAGCTTCTTGCTGGCAGATCAGAGAACGCAGTGAAGAACCACTGGAATTCTACAGCCAAGAAGAGGGCTTCACGCCAAGTTGTACAGCAAGAAGAAGAAGAAGGAGGTGTGGTCAGCAGTGACGATCAAGGAAAACTGAGCATCTTTCCAGAGCTTGAGGGTTCAGATCCTGGTAACGTTGATTCTCTCACGGATGGAGATTTGAGCTGGTCTGATGATTTAAACATTTCCAGTCTACCAGATAACAAACAGCCTGATCTGAGCGACCCTCAAGAATGTGGATGTGCCTTCGAGAATTTTGTAATCATTTAGTATGGCAGACACGAAGGAATCTGATAAGCACTGTGCAGTCAGATGAAGCAAACAGCATTACAAACAGTGTAGCAGGCATATCACCAACACTTTCTTTTTTGTCAATATTTTTTTTATGAGAGCTACCTCAGCCTCTGATTTAATTTGATTAGCAGATATCTGTACATTTCTGTATAAGAGACCATTGTGTCATGTATAGCTGATTGCCAAGAGTTACAAGGCTTTACGTTTATTTGTATGTATGTGTAGGATATGTTTGTGAGAAGATGTAAACCAGATTTAATGAATTGTCATCCCTCACTGATTTTAAT

Fln Alignment:

sp_v1.1_unigene8176___MAER---PWTKKEDEVLRKNVQKFKGSDWRKIADSIKERSDVQCLQRWQKVLNPNLVKGYWTKEEDEKLAELVELFGTKRWAAIARSIPGRIGKQCRERWHNHL
A5JYF3______________VAERIKGPWSPEEDATLHRLVEKYGPRNWSQISRGIPGRSGKSCRLRWCNQLSPQVEHRPFSPHEDATIIQAHARHGNK-WATIARLLPGRTDNAIKNHWNSTL

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
87			25	75	0.996473
88			25	75	0.996473
219	14	85			0.993533
300		18		81	0.999994
872		92		7	0.999532
905			4	86	0.999539
959		36		63	1.0
1076	25	75			0.996473
1079			25	75	0.996473
1080	75		25		0.996473
1123		60	40		1.0
1141		20		80	0.995493
1144	25		75		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
692	706	AAG AAG AAG AAG AAG	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain