SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7761

Length: 2017 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene7761
CGTCGTGACCTTGGCTGTCACTCAATTAGTAGTGGTAATAATAATAAGCCTCCGGACCCTACACTTGCATATCCATTGGCCTTCATCTTGTTTCACATATTTGCAGTGACAGAGCCTGTCTTTATAACGCTTCTCTCTCTCAAAGAAAAAAAATTTGACATGGCAGTGACAATTCAGCTGGGCAGATTTTCTGTGCATCTTGCGGACTCCAGACCTGCACCTGGATTGGCTTCCTGCGACTCTGCCATCTTCACCGGGTCTAAAAAGCTAAAGCCAATTGGGATTAGTTTAAAAGGCAGAACAAGACGAGCCTTTGAAAGAACTACACACTGTTCCCTACAAGCACCTCCTCCTGCCTGGCCAGGAAGAGCAGTTGTAGATGAAGATAGAAAAGTATGGGATGGTCCAAAGCCCTTTTCTGTTGTTGGTTCTACAGGCTCAATCGGAACTCAGACATTGGACATTGTCGCCGAACATCCGGATAAGTTCAGGGTTGTTGCACTAGCAGCTGGTTCAAATGTGACACTACTTGCAGATCAGGTGAGGAGATTCAAGCCAAAGCTTGTTTCTATCGGTAATGAGGCTTTGGCTGCTGAACTCAAGGAGGCTTTGGCAGATGTTGAACCTAAGCCAGAAATACTTTTTGGAGAGGAAGGAATTATAGAGGTTGCTCAACATCCTGAGGCCGTCAGTGTTGTAACAGGCATTGTAGGATGTGCGGGGTTGAAGCCAACTGTTGCAGCAATAGAAGCAGGGAAGGACATAGCCCTTGCAAACAAGGAGACTTTAATTGCTGGAGGTCCCTTTGTTCTGCCACTTGCACACAAACACAAAGTTAAAATTCTACCTGCTGACTCTGAGCATTCTGCTATATTTCAGTGCATTCAAGGCTTACCAGAAGGAGCCCTGCGGCGAATTATTTTAACAGCTTCTGGAGGGGCATTCAGGGATTGGCCAGTGGAGAAATTGAAGGAGGTAAAAGTTGCTGATGCTCTAAAACATCCTAACTGGAATATGGGGAAAAAAATCACCGTTGATTCTGCCACCTTGTTTAATAAGGGTCTTGAGGTAATAGAAGCACACTACCTTTATGGAGTTGACTATGACAATATTGAGATTATGATCCACCCACAATCGATAATTCATTCAATGATTGAGACCCAGGATTCCTCTGTTTTAGCTCAACTGGGTTGGCCAGATATGCGATTACCAATACTGTATACAATGTCATGGCCTGAAAGAATATCATGCTCGGAGATAACCTGGCCTCGGCTTGACCTTTGCAAGGTGGGTTCATTAACCTTCAAAGCTCCAGATTGTGTGAAATATCCTTCAATGGATCTTGCTTATTCTGCTGGTAGAGCAGGAGGAACCATGACTGGAGTCCTTAGTGCAGCAAATGAGAAGGCTGTTGAGTTATTTATTGATGAAAGAATTTCCTATCTGGATATTTTTAAGATTGTTGAAATGACATGTGAAAAACACAAAAATGAGCTAGTGCATCTACCATCATTGGAAGAGATAGTACACTATGACCAATGGGCCAGATATTATGCTGCTTCCGTGGGGAAATCAAGCTTGGAGCCTGCCACAGTCTGAGGAATCAGCACACCAAAGCTTTTTGGCTTATAAGTAATTTTGCAATGAAAGATGTTTTCTTCCCTTGAAGGGTTGCCTTTATCATGTAATTTATTGGATCTATTTCGTTGTATGAATCTTCTATGAATTTTTCATATCATTTGCCTCTCTGGCCTAGCGTAGTTCTTTACATTGATTATCTTAGCAAGACAGCCATACAGATAATTTGTAAAAGTACTCCTGGCTGTTTGTGGAAAAACCGCAAGACCAAAATTGGTAACTGGAGGCTTTTTGCCAAGGTTGCACACTTTACATATATGCTGGTTTTGCATGAGTATATGCTGGTTTTGCATGAGTATAAGCTTCTCAAATTAGAGCATAGGAAAATGGTCATTGTAAATGCTATCCTAGTTTTAATCATATGCTAATAAAACGAATA

Ace file of the UniGene sp_v1.1_unigene7761

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	1-deoxy-D-xylulose 5-phosphate reductoisomerase n=3 Tax=Pinaceae RepID=C6ZG57_PINTA	-	-	97%
FL-Next	tr=1-deoxy-D-xylulose 5-phosphate reductoisomerase; Pinus taeda (Loblolly pine).	-	-	99%
Blast2go	1-deoxy-d-xylulose 5-phosphate reductoisomerase	-	-	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	91%
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	91%

Source	InterPros	Term	Type	Identity
Blast2go	1-deoxy-D-xylulose 5-phosphate reductoisomerase	IPR003821	-	91%
Blast2go	1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal	IPR013512	-	91%
Blast2go	1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal	IPR013644	-	91%
Blast2go	NAD(P)-binding domain	IPR016040	-	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C6ZG57

Fln msg:

Fln protein: MAVTIQLGRFSVHLADSRPAPGLASCDSAIFTGSKKLKPIGISLKGRTRRAFERTTHCSLQAPPPAWPGRAVVDEDRKVWDGPKPFSVVGSTGSIGTQTLDIVAEHPDKFRVVALAAGSNVTLLADQVRRFKPKLVSIGNEALAAELKEALADVEPKPEILFGEEGIIEVAQHPEAVSVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHKVKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWNMGKKITVDSATLFNKGLEVIEAHYLYGVDYDNIEIMIHPQSIIHSMIETQDSSVLAQLGWPDMRLPILYTMSWPERISCSEITWPRLDLCKVGSLTFKAPDCVKYPSMDLAYSAGRAGGTMTGVLSAANEKAVELFIDERISYLDIFKIVEMTCEKHKNELVHLPSLEEIVHYDQWARYYAASVGKSSLEPATV*

Protein Length: 481

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTAGTAGTGGTAATAATAATAAGCCTCCGGACCCTACACTTGCATATCCATTGGCCTTCATCTTGTTTCACATATTTGCAGTGACAGAGCCTGTCTTTATAACGCTTCTCTCTCTCAAAGAAAAAAAATTTGAC_-_ATGGCAGTGACAATTCAGCTGGGCAGATTTTCTGTGCATCTTGCGGACTCCAGACCTGCACCTGGATTGGCTTCCTGCGACTCTGCCATCTTCACCGGGTCTAAAAAGCTAAAGCCAATTGGGATTAGTTTAAAAGGCAGAACAAGACGAGCCTTTGAAAGAACTACACACTGTTCCCTACAAGCACCTCCTCCTGCCTGGCCAGGAAGAGCAGTTGTAGATGAAGATAGAAAAGTATGGGATGGTCCAAAGCCCTTTTCTGTTGTTGGTTCTACAGGCTCAATCGGAACTCAGACATTGGACATTGTCGCCGAACATCCGGATAAGTTCAGGGTTGTTGCACTAGCAGCTGGTTCAAATGTGACACTACTTGCAGATCAGGTGAGGAGATTCAAGCCAAAGCTTGTTTCTATCGGTAATGAGGCTTTGGCTGCTGAACTCAAGGAGGCTTTGGCAGATGTTGAACCTAAGCCAGAAATACTTTTTGGAGAGGAAGGAATTATAGAGGTTGCTCAACATCCTGAGGCCGTCAGTGTTGTAACAGGCATTGTAGGATGTGCGGGGTTGAAGCCAACTGTTGCAGCAATAGAAGCAGGGAAGGACATAGCCCTTGCAAACAAGGAGACTTTAATTGCTGGAGGTCCCTTTGTTCTGCCACTTGCACACAAACACAAAGTTAAAATTCTACCTGCTGACTCTGAGCATTCTGCTATATTTCAGTGCATTCAAGGCTTACCAGAAGGAGCCCTGCGGCGAATTATTTTAACAGCTTCTGGAGGGGCATTCAGGGATTGGCCAGTGGAGAAATTGAAGGAGGTAAAAGTTGCTGATGCTCTAAAACATCCTAACTGGAATATGGGGAAAAAAATCACCGTTGATTCTGCCACCTTGTTTAATAAGGGTCTTGAGGTAATAGAAGCACACTACCTTTATGGAGTTGACTATGACAATATTGAGATTATGATCCACCCACAATCGATAATTCATTCAATGATTGAGACCCAGGATTCCTCTGTTTTAGCTCAACTGGGTTGGCCAGATATGCGATTACCAATACTGTATACAATGTCATGGCCTGAAAGAATATCATGCTCGGAGATAACCTGGCCTCGGCTTGACCTTTGCAAGGTGGGTTCATTAACCTTCAAAGCTCCAGATTGTGTGAAATATCCTTCAATGGATCTTGCTTATTCTGCTGGTAGAGCAGGAGGAACCATGACTGGAGTCCTTAGTGCAGCAAATGAGAAGGCTGTTGAGTTATTTATTGATGAAAGAATTTCCTATCTGGATATTTTTAAGATTGTTGAAATGACATGTGAAAAACACAAAAATGAGCTAGTGCATCTACCATCATTGGAAGAGATAGTACACTATGACCAATGGGCCAGATATTATGCTGCTTCCGTGGGGAAATCAAGCTTGGAGCCTGCCACAGTCTGA___GGAATCAGCACACCAAAGCTTTTTGGCTTATAAGTAATTTTGCAATGAAAGATGTTTTCTTCCCTTGAAGGGTTGCCTTTATCATGTAATTTATTGGATCTATTTCGTTGTATGAATCTTCTATGAATTTTTCATATCATTTGCCTCTCTGGCCTAGCGTAGTTCTTTACATTGATTATCTTAGCAAGACAGCCATACAGATAATTTGTAAAAGTACTCCTGGCTGTTTGTGGAAAAACCGCAAGACCAAAATTGGTAACTGGAGGCTTTTTGCCAAGGTTGCACACTTTACATATATGCTGGTTTTGCATGAGTATATGCTGGTTTTGCATGAGTATAAGCTTCTCAAATTAGAGCATAGGAAAATGGTCATTGTAAATGCTATCCTAGTTTTAATCATATGCTAATAAAACGAATA

Fln Alignment:

sp_v1.1_unigene7761___MAVTIQLGRFSVHLADSRPAPGLASCDSAIFTGSKKLKPIGISLKGRTRRAFERTTHCSLQAPPPAWPGRAVVDEDRKVWDGPKPFSVVGSTGSIGTQTLDIVAEHPDKFRVVALAAGSNVTLLADQVRRFKPKLVSIGNXXXXXXXXXXXXDVEPKPEILFGEEGIIEVAQHPEAVSVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHKVKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWNMGKKITVDSATLFNKGLEVIEAHYLYGVDYDNIEIMIHPQSIIHSMIETQDSSVLAQLGWPDMRLPILYTMSWPERISCSEITWPRLDLCKVGSLTFKAPDCVKYPSMDLAYSAGRAGGTMTGVLSAANEKAVELFIDERISYLDIFKIVEMTCEKHKNELVHLPSLEEIVHYDQWARYYAASVGKSSLEPATV
C6ZG57______________MAVTIQLGRFSVHLADSRPAPGLASCDSAIFTGSKKLKPIGISLKGRTRRALGRTTHCSLQAPPPAWPGRAVVDEDRKVWDGPKPFSVVGSTGSIGTQTLDIVAEHPDKFRVVALAAGSNVTLLADQVRRFKPKLVSIGNEALAAELKEALADVEPKPEILFGEEGIIEVAQHPEAVSVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHKVKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWNMGKKITVDSATLFNKGLEVIEAHYLYGVDYDNIEIMIHPQSIIHSMIETQDSSVLAQLGWPDMRLPILYTMSWPERISCSEITWPRLDLCKVGSLTFKAPDCVKYPSMDLAYSAGRAGGTMTGVLSAANEKAVELFIDERISYLDIFKIVEMTCEKHKNELVHLPSLEEIVHYDQWARYYAASVGKSSLEPATV

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
55	66		33		0.997452
56	33			33	0.997753
57		66	33		0.997452
58		66	33		0.997452
59		66	33		0.997452
60			33	66	0.997452
156	20			80	0.995493
1388			17	82	1.0
1390	82	17			1.0
1394	5	82			0.999919
1398	81		6	12	0.999943
1399	81		6	12	0.999943
1400	81	6	12		0.999943
1401			12	87	0.999964
1402		12	87		0.999964
1403	81			18	1.0
1405	84			15	0.999986
1406	76		15	7	0.999983
1407		23	76		1.0
1408	7		76	15	0.999983
1600		10	90		0.90298
1601			90	10	0.90298
1602	90			10	0.90298
1603	90		10		0.90298
1604			10	90	0.90298
1606	90			10	0.90298
1649	90	10			0.90298
1651	70	20		10	0.999998
1652		10		90	0.90298
1654		20		80	0.999996
1655	20		10	70	0.999998
1656	10			90	0.90298
1657		10		90	0.90298
1661		88	11		0.923564
1662		88	11		0.923564
1666		11	88		0.923564
1668	88	11			0.923564
1669			88	11	0.923564
1670		11	88		0.923564
1671	11		88		0.923564
1914	7	14		78	0.999974

SSRs (tot: 1)

Start position	End position	Sequence	Length
36	47	TAA TAA TAA TAA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain