SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7631

Length: 296 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

>sp_v1.1_unigene7631
ATCAAGTCCTCTGGTTTTGTCCACGGTATGTAGCATTGTTCTTAATCGTCGTGACCTTGGCTGTCACTCAAGTTGAAGCTACAGCTGGAAGCTTTCTTCACGTGTGTCATACTTAGGCTTGCACAAGGCAGGTATGGTGCATCATACCAACAGCAAGAAGTTGCAATGGAAGCACTGGTAGACTTCTGCAGACAACCAACATTTATCTTTGAGATGTATGCAAATTTTGATTGTGATGTTACTTGCAGTAACTTATTTGAAGATATTTGTAACTTGCTGTCAAAAAGTGCCTTTCC

Ace file of the UniGene sp_v1.1_unigene7631

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pattern formation protein, putative n=1 Tax=Ricinus communis RepID=B9S916_RICCO	-	-	6.0e-31	85%
FL-Next	sp=Pattern formation protein EMB30; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	78%
Blast2go	pattern formation	-	-	1.13377e-30	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytokinesis by cell plate formation	GO:0000911	Biological Process	1.13377e-30	89%
Blast2go	basipetal auxin transport	GO:0010540	Biological Process	1.13377e-30	89%
Blast2go	ER body organization	GO:0080119	Biological Process	1.13377e-30	89%
Blast2go	longitudinal axis specification	GO:0009942	Biological Process	1.13377e-30	89%
Blast2go	cellular cell wall organization	GO:0007047	Biological Process	1.13377e-30	89%
Blast2go	phloem or xylem histogenesis	GO:0010087	Biological Process	1.13377e-30	89%
Blast2go	cell adhesion	GO:0007155	Biological Process	1.13377e-30	89%
Blast2go	root hair cell differentiation	GO:0048765	Biological Process	1.13377e-30	89%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	1.13377e-30	89%
Blast2go	establishment of planar polarity	GO:0001736	Biological Process	1.13377e-30	89%
Blast2go	lateral root primordium development	GO:0010386	Biological Process	1.13377e-30	89%
Blast2go	GTP:GDP antiporter activity	GO:0010292	Molecular Function	1.13377e-30	89%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	1.13377e-30	89%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q42510

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 961 aas, your sequence is shorter than subject: 98 - 1451

Fln protein: IKSSGFVHGM*HCS*SS*PWLSLKLKLQLEAFFTCVILRLAQGRYGASYQQQEVAMEALVDFCRQPTFIFEMYANFDCDVTCSNLFEDICNLLSKSAF

Protein Length: 99

Fln nts: ATCAAGTCCTCTGGTTTTGTCCACGGTATGTAGCATTGTTCTTAATCGTCGTGACCTTGGCTGTCACTCAAGTTGAAGCTACAGCTGGAAGCTTTCTTCACGTGTGTCATACTTAGGCTTGCACAAGGCAGGTATGGTGCATCATACCAACAGCAAGAAGTTGCAATGGAAGCACTGGTAGACTTCTGCAGACAACCAACATTTATCTTTGAGATGTATGCAAATTTTGATTGTGATGTTACTTGCAGTAACTTATTTGAAGATATTTGTAACTTGCTGTCAAAAAGTGCCTTTCC

Fln Alignment:

sp_v1.1_unigene7631___QLEAFFTCVILRLAQGRYGASYQQQEVAMEALVDFCRQPTFIFEMYANFDCDVTCSNLFEDICNLLSKSAF
Q42510______________QLEAFFSCVILRLAQGKYGPSYQQQEVAMEALVNFCRQKSFMVEMYANLDCDITCSNVFEELSNLLSKSTF

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
183		87		12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain