SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7460

Length: 2475 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene7460
AGGCTGCCTGGTTGAACTGCATACAAGGAAAGGATGGTGGGGATTCAATGCCAATGCCTCCACGTTTGGTAGGAGAAGAAGAGTTGAGGCCTTTCATTATGGCCATGCAGGCACATGAGACCGCAAACTCAGGTGCAAGGAAGAAACTAGGGAGTTCGCTGGCCCCAGATGTTCAACACTATGGAAGGGGTAAACGAGCCAGAGAGGTGCGGTCATATGGCGATCAGTTAACAGAAGAAGAATTTGAAAGGCTTTGTCAAGTTGGACCTCCAGAGCCTCCCAAAAATCATGATTCAGGAAAAGATATCCACAAAACGAAAAATGCAGATAGACTTGCGACAGTGACAGATACTGAAATAGTACCGGTAAAGCGAGGCCGAGGTAGACCCAGGAGAAAAAGTGATACATCTGTCTTGTCAGCAGGTTCAGCGAAACCCAGTATTGATGGCAGTTCTTCAGATAAACCAGTATCAGGTTGTATTGGGGAAATTGGTGGCCATCTTAATATGTCTCACCCATCCAAGGTACAAAATCAAGATGCTGAATCTGCAGTTACTAATACATCTTCCCTCTCCACGATACAAAATCAAAATATGGAAACTGCAGTCATTTATACATCTTGCCCCTCCAAGGCACAATAGTCAAAAGTGCAGGGACTGCAGTCACAGATACATCTTGCCCCTCCGAGGCACAGAATCAGAATGCTATAACTGCAGTCACTAGTACATCCTGCCCCTCTATGGTGCAAGATCGTAGTGCTGAAAATGCAGTCACTAGTGTGTCTTTCCTGTCAAAGGTAGGACATGAAAATACCGTAACAGCACTCACTAATACATCATGCTCCTCCACTGTACAAAATCAAAATGCTGAAAATACATCCTTCTTTTTCAAGGAACAAAATCAAAATGTTGGCACTGCAGTCAATACATTGCACCCCACTAACGTACAAAATATAAAAGTGGAAACAGCAGTCATCAATACATCTTGCCCCTCTAATGTACAAAATCAAATTGCTGAAACTGCAAGCACTGATATATCTTGCCCCTCCAAGTTACAAAATCAAAATATTGAAACTGTAGTCATGAATACATCTTTCCCCTCGGTACAAAATGAAACTGCTGAAACTGCAGTCACTTCAGTTGAAACTAAATCTGAACATGCAGCCATGTATGCTGAAAAGTCAGAAACAGTTGATGAAACTGCAAAAGCTGATAAACAAGAAAATGTTAGAATTGAGGAGAGGGCCAGTTCTAATGTTATAGATTTAGAAGGGACAAAACAAAATTTGATATCTGATGTGGCTGATGAGCATATGCCGGAGAAACAGGATGTTGACAAAGAAAACAGTAAGGATGATTTTGACACTGATCAGCATTCAAGGTTGACAACACATTTGTTGGTTTCAAATGTCATACAAGTTGGAAATGATCCTGAAAACACTTCAGAGGCCCATATGCTTGAGGAGTTGCAGCCAGATACAATTGTTGACAAGGAAATACAAAGCTCAGAGCACCAAATGGATACTTCTGGACCTGATTGTGTTCTAGATGGAACAGGAAATGGATACTTTGAAGCCACCAATCCAGCTCATTCAGTAGCTTCTCCTGCGGAACACCAAATAAAAAAGCCAATCAAGGATCCTGAAGTTGTCGCTGCAGATTTAGAAATGACCAGTGCAATGGATGTAAGTACAGAATGATTCATATTTCACTGGGTTACAATTCAAGATTTTAACAGGGAATCAAAACCCTTACACTGTTCCTGCTATAACATAAGCAGCTTGATCTGTGATCAGAATCACAAGACATCATTGGATATGAGCATAGTGGCAGAAAAATGCGAGTGGTTAAGGAATAGAAACAATATACCAAAAGACTCTAGGAAAATAGAAACTGAAATTGGCCAGGTGATAAAATCATGTCTGCTGTCAGAGGGGACTACAAGGTAAAAATATGTTCTCATGAGTTGCATGTTATATGTATACAATATAGTTTTGATGTTTCATTAGAGAATCAGGTGCAATTACAGCAGTTCAACAAGAACACTTGTCGGCCTAGGCCAGAAACTGCTGAGATAATTGCCCATCTCAAATTTTTCTATCTACTTGACTGGGTTTGGTTACTAAAATAGACAAGTCAGAAAACATCCTATGTTCAGGGGATGGACAGTTCTATGCATTGTATAGTGGCTTTTACTCAAGCTCTCCTATGTCCCAGGTTTGGTAGCTAATAAAATTTCATATTTCAAATTATACATTGTTCTCTTAAAAGTCAGAAGAAGAATACACATGGGAAGTGGAGATCCCGGCTTCACTACATTGAAATATGAACTGTTATTCTAAGTGCTCCCAGACCAATAAACAGGTTCATTGCCTTACTGATGTTACCCTTTGCGATTTGCCAAATTGGTATTCCTATTCACTTGGCTGATGATGGTCTTCTAAGTTCTCATGGATTTAGACATCATACATCCCCT

Ace file of the UniGene sp_v1.1_unigene7460

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SWI/SNF class chromatin remodeling complex protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TXL2_PHYPA	-	-	6.0e-17	43%
FL-Next	tr=SWI/SNF class chromatin remodeling complex protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	43%
Blast2go	syd atpase chromatin binding	-	-	1.04434e-16	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to wounding	GO:0009611	Biological Process	1.04434e-16	59%
Blast2go	flower development	GO:0009908	Biological Process	1.04434e-16	59%
Blast2go	regulation of gene expression, epigenetic	GO:0040029	Biological Process	1.04434e-16	59%
Blast2go	organ boundary specification between lateral organs and the meristem	GO:0010199	Biological Process	1.04434e-16	59%
Blast2go	chromatin binding	GO:0003682	Molecular Function	1.04434e-16	59%
Blast2go	cytosol	GO:0005829	Cellular Component	1.04434e-16	59%
Blast2go	nucleus	GO:0005634	Cellular Component	1.04434e-16	59%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: A9TXL2

Fln msg: your sequence is shorter than subject: 213 - 2174

Fln protein: AAWLNCIQGKDGGDSMPMPPRLVGEEELRPFIMAMQAHETANSGARKKLGSSLAPDVQHYGRGKRAREVRSYGDQLTEEEFERLCQVGPPEPPKNHDSGKDIHKTKNADRLATVTDTEIVPVKRGRGRPRRKSDTSVLSAGSAKPSIDGSSSDKPVSGCIGEIGGHLNMSHPSKVQNQDAESAVTNTSSLSTIQNQNMETAVIYTSCPSKAQ*

Protein Length: 214

Fln nts: AGGCTGCCTGGTTGAACTGCATACAAGGAAAGGATGGTGGGGATTCAATGCCAATGCCTCCACGTTTGGTAGGAGAAGAAGAGTTGAGGCCTTTCATTATGGCCATGCAGGCACATGAGACCGCAAACTCAGGTGCAAGGAAGAAACTAGGGAGTTCGCTGGCCCCAGATGTTCAACACTATGGAAGGGGTAAACGAGCCAGAGAGGTGCGGTCATATGGCGATCAGTTAACAGAAGAAGAATTTGAAAGGCTTTGTCAAGTTGGACCTCCAGAGCCTCCCAAAAATCATGATTCAGGAAAAGATATCCACAAAACGAAAAATGCAGATAGACTTGCGACAGTGACAGATACTGAAATAGTACCGGTAAAGCGAGGCCGAGGTAGACCCAGGAGAAAAAGTGATACATCTGTCTTGTCAGCAGGTTCAGCGAAACCCAGTATTGATGGCAGTTCTTCAGATAAACCAGTATCAGGTTGTATTGGGGAAATTGGTGGCCATCTTAATATGTCTCACCCATCCAAGGTACAAAATCAAGATGCTGAATCTGCAGTTACTAATACATCTTCCCTCTCCACGATACAAAATCAAAATATGGAAACTGCAGTCATTTATACATCTTGCCCCTCCAAGGCACAATAG___TCAAAAGTGCAGGGACTGCAGTCACAGATACATCTTGCCCCTCCGAGGCACAGAATCAGAATGCTATAACTGCAGTCACTAGTACATCCTGCCCCTCTATGGTGCAAGATCGTAGTGCTGAAAATGCAGTCACTAGTGTGTCTTTCCTGTCAAAGGTAGGACATGAAAATACCGTAACAGCACTCACTAATACATCATGCTCCTCCACTGTACAAAATCAAAATGCTGAAAATACATCCTTCTTTTTCAAGGAACAAAATCAAAATGTTGGCACTGCAGTCAATACATTGCACCCCACTAACGTACAAAATATAAAAGTGGAAACAGCAGTCATCAATACATCTTGCCCCTCTAATGTACAAAATCAAATTGCTGAAACTGCAAGCACTGATATATCTTGCCCCTCCAAGTTACAAAATCAAAATATTGAAACTGTAGTCATGAATACATCTTTCCCCTCGGTACAAAATGAAACTGCTGAAACTGCAGTCACTTCAGTTGAAACTAAATCTGAACATGCAGCCATGTATGCTGAAAAGTCAGAAACAGTTGATGAAACTGCAAAAGCTGATAAACAAGAAAATGTTAGAATTGAGGAGAGGGCCAGTTCTAATGTTATAGATTTAGAAGGGACAAAACAAAATTTGATATCTGATGTGGCTGATGAGCATATGCCGGAGAAACAGGATGTTGACAAAGAAAACAGTAAGGATGATTTTGACACTGATCAGCATTCAAGGTTGACAACACATTTGTTGGTTTCAAATGTCATACAAGTTGGAAATGATCCTGAAAACACTTCAGAGGCCCATATGCTTGAGGAGTTGCAGCCAGATACAATTGTTGACAAGGAAATACAAAGCTCAGAGCACCAAATGGATACTTCTGGACCTGATTGTGTTCTAGATGGAACAGGAAATGGATACTTTGAAGCCACCAATCCAGCTCATTCAGTAGCTTCTCCTGCGGAACACCAAATAAAAAAGCCAATCAAGGATCCTGAAGTTGTCGCTGCAGATTTAGAAATGACCAGTGCAATGGATGTAAGTACAGAATGATTCATATTTCACTGGGTTACAATTCAAGATTTTAACAGGGAATCAAAACCCTTACACTGTTCCTGCTATAACATAAGCAGCTTGATCTGTGATCAGAATCACAAGACATCATTGGATATGAGCATAGTGGCAGAAAAATGCGAGTGGTTAAGGAATAGAAACAATATACCAAAAGACTCTAGGAAAATAGAAACTGAAATTGGCCAGGTGATAAAATCATGTCTGCTGTCAGAGGGGACTACAAGGTAAAAATATGTTCTCATGAGTTGCATGTTATATGTATACAATATAGTTTTGATGTTTCATTAGAGAATCAGGTGCAATTACAGCAGTTCAACAAGAACACTTGTCGGCCTAGGCCAGAAACTGCTGAGATAATTGCCCATCTCAAATTTTTCTATCTACTTGACTGGGTTTGGTTACTAAAATAGACAAGTCAGAAAACATCCTATGTTCAGGGGATGGACAGTTCTATGCATTGTATAGTGGCTTTTACTCAAGCTCTCCTATGTCCCAGGTTTGGTAGCTAATAAAATTTCATATTTCAAATTATACATTGTTCTCTTAAAAGTCAGAAGAAGAATACACATGGGAAGTGGAGATCCCGGCTTCACTACATTGAAATATGAACTGTTATTCTAAGTGCTCCCAGACCAATAAACAGGTTCATTGCCTTACTGATGTTACCCTTTGCGATTTGCCAAATTGGTATTCCTATTCACTTGGCTGATGATGGTCTTCTAAGTTCTCATGGATTTAGACATCATACATCCCCT

Fln Alignment:

sp_v1.1_unigene7460___AAWLNCIQGKDGGDSMPMPPRLVGEEELRPFIMAMQAHETANSGARKKLGSSL--APDVQHYGRGKRAREVRSYGDQLTEEEFERLCQVG---------------PPEPPKNHDSGK
A9TXL2______________ARWKQCVKVKLGCEPPPLPPRLIGESELGPIVKVLTNKLTKKPGSSKG-GSSKGGAAEIQDYGRGKRAREIRSYGEQFSEREFEKLCQVDNSSSDDDDDEDVHPKPPPPPKKTEEGR

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1561			66	33	0.997452
1563	66		33		0.997452
1564	66		33		0.997452
1742			87	12	0.992554
1746	87		12		0.992554
1776	12	87			0.992554
2096	55		44		1.0
2102		87		12	0.992554
2103		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain