SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene7043

Length: 2071 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene7043
TTTACTTTATTTGGGGTATATTTAGCCAGCTGAACGTCATGAGTTGGATGCACTCAGATCTCCAATATAACGGTACTCGATGAGTCGATAGATTATATACATCAAAGACCACCATACCCAATAAAATATTGTGTGTTAGGTGCTGGGAATTATTCATGCAATGGGATTTAGTCACACAATGGCAATTCCAGGATCAAAAGCTTTCTGGCTTCTGTTGGCCATAGTGGGAGTTGTAATTCATGCCTATGCAGAGGATTACACCATTGGTATCGATTATGGGCAGCTTGGCGACAACCTGCCCTCCACAGAAGAAGCAATCCACTTGATCCAAAGAATGAAGGCAGGCAGGGTTAAAATCTATGATACTAATCCAGAAATACTAAAGGCTCTTGCGCACACTGGTATTAAGGTCGCAGTGATGGTTAAGAACGAAGATATTGCCAATGTCTCGGCCAACCAGTCATTTGCAGACAAATGGGTGAAGAATAATGTTGTTTACTTCTATCCTGCAACCAGGATCAATATAGTCCTGGTGGGGAATGAAATTTTATCAGACTACTCCAACAACCAGACCTGGTACCAGCTAGTTCCCGCTATGCTGAGAATCAGGCGAGCTCTACTTAGATATAAGCTGCATCATGTCAAGGTAGGAACCCCTTTGGCTATGGATGTGCTCAACACTTCATTTCCTCCATCATCTGGTGCTTTTCGGGATGATGTTGCGGAAACTGTCATGAAACCAATGCTCGAGTTTCTGACTAGAACGAGATCCTACTTTTTTATTGATGTGTATCCTTACTTTGCTTGGTCTTCTGATCCTACGAATATTTCTTTGGAATATGCCAATTTTGGGGATCATGATAAAAACTACACCGATCCTAATGGCCTTGTGTATACCAATTTGCTGGACCAGCAGCTTGATGCGGTTGTAGCTGCGATGAGCAAACTGGGTTATGAGGACATTAGGTTAATCATAGCTGAAACTGGGTGGCCCAATGCCGGTGACCTTAATCAGTTGGGTGCCAACATCTTTAATTCAGCCCATTATAACCGGCGGCTCATAAGGAGAATGGTTGCAGATCCTCCCCTGGGAACCCCTCGCAGGCCCAATCAATTCATCCCCACATACATTTTTTCATTGTTTAATGAGGATCAAAAGCCTGGACCGGGAACTGAGAGACATTGGGGTTTGTTGTATCCAAATGGAACCAGGGTTTATGAGATTGATCTCACTGGCGAGCTCCAGGATTCGGAGTATAAGCCTCTCCCTCCTCCACCTCCACCCTACACTGGCAAATTGTGGTGTGTTGTAGATGCTAATGCAAATGTTTCTTCCTTGCCGTCTGCTATTAATTATGCTTGCAGTCAGGGAAACAACACCTGCGCTTCCATCCAGCCAGGGAAGCCTTGTTATCAGCCTAACACGGTTATTGATCATGCATCCTATGCCTTCAACAGTTATTGGCAGCAATTCAAGAACTCAGGGGCCACTTGTTACTTTAATGGAGCTGCAACACTAGTCACACAGGACCCCAGTCGTGGAAGTTGCACATACCCATTCACTTGACTGATCTGCAGTGTGGAAGCAGACGTTTTTTCTCCATCTGACCTATTTGCAAAACTGTCTCCAGATGTCTGGCTTTGTTGAATGCAGTATTTTTGTCAGTTCTAGTCGTTCAGAAGATTACACTACTGATTCAATTCATTGTAGAAGCACTAAATTTTTTATCTTAAAGGAACTTGTTACATAGCATCCTTGTAATTGATAGCAGGGATTCCTTATATGTATATAGTTATCTATCAGTTTATAGATCCCATATTTCTAGGGATCTCTATAACTGTTGTTCTATCTGTTACTGCACCTCTTTGCAATAGTCTAATGAATAATAAATGCTTTTGAGCTTTCACCATCCATATGTTGATATTTAAGGAAGCATCTCTGTGTTTCCTGGTGATTCTGTGCCTGATGGATCTCTTTGGCTTTGTGGTTAGTTTACTTGTTCGCTGGTGTGTGTTTAGTGGTATCCAATCTGGGTATCATACATTGCAGGAGTGTGCTATCTTGTGTTAA

Ace file of the UniGene sp_v1.1_unigene7043

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	glycosyl hydrolase family 17 protein	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	glycosyl hydrolase family 17 protein	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	72%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	0.0	72%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 17	IPR000490	-	72%
Blast2go	X8	IPR012946	-	72%
Blast2go	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	72%
Blast2go	Glycoside hydrolase, superfamily	IPR017853	-	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAN5

Fln msg:

Fln protein: MGFSHTMAIPGSKAFWLLLAIVGVVIHAYAEDYTIGIDYGQLGDNLPSTEEAIHLIQRMKAGRVKIYDTNPEILKALAHTGIKVAVMVKNEDIANVSANQSFADKWVKNNVVYFYPATRINIVLVGNEILSDYSNNQTWYQLVPAMLRIRRALLRYKLHHVKVGTPLAMDVLNTSFPPSSGAFRDDVAETVMKPMLEFLTRTRSYFFIDVYPYFAWSSDPTNISLEYANFGDHDKNYTDPNGLVYTNLLDQQLDAVVAAMSKLGYEDIRLIIAETGWPNAGDLNQLGANIFNSAHYNRRLIRRMVADPPLGTPRRPNQFIPTYIFSLFNEDQKPGPGTERHWGLLYPNGTRVYEIDLTGELQDSEYKPLPPPPPPYTGKLWCVVDANANVSSLPSAINYACSQGNNTCASIQPGKPCYQPNTVIDHASYAFNSYWQQFKNSGATCYFNGAATLVTQDPSRGSCTYPFT*

Protein Length: 470

Fln nts: TTTACTTTATTTGGGGTATATTTAGCCAGCTGAACGTCATGAGTTGGATGCACTCAGATCTCCAATATAACGGTACTCGATGAGTCGATAGATTATATACATCAAAGACCACCATACCCAATAAAATATTGTGTGTTAGGTGCTGGGAATTATTCATGCA_-_ATGGGATTTAGTCACACAATGGCAATTCCAGGATCAAAAGCTTTCTGGCTTCTGTTGGCCATAGTGGGAGTTGTAATTCATGCCTATGCAGAGGATTACACCATTGGTATCGATTATGGGCAGCTTGGCGACAACCTGCCCTCCACAGAAGAAGCAATCCACTTGATCCAAAGAATGAAGGCAGGCAGGGTTAAAATCTATGATACTAATCCAGAAATACTAAAGGCTCTTGCGCACACTGGTATTAAGGTCGCAGTGATGGTTAAGAACGAAGATATTGCCAATGTCTCGGCCAACCAGTCATTTGCAGACAAATGGGTGAAGAATAATGTTGTTTACTTCTATCCTGCAACCAGGATCAATATAGTCCTGGTGGGGAATGAAATTTTATCAGACTACTCCAACAACCAGACCTGGTACCAGCTAGTTCCCGCTATGCTGAGAATCAGGCGAGCTCTACTTAGATATAAGCTGCATCATGTCAAGGTAGGAACCCCTTTGGCTATGGATGTGCTCAACACTTCATTTCCTCCATCATCTGGTGCTTTTCGGGATGATGTTGCGGAAACTGTCATGAAACCAATGCTCGAGTTTCTGACTAGAACGAGATCCTACTTTTTTATTGATGTGTATCCTTACTTTGCTTGGTCTTCTGATCCTACGAATATTTCTTTGGAATATGCCAATTTTGGGGATCATGATAAAAACTACACCGATCCTAATGGCCTTGTGTATACCAATTTGCTGGACCAGCAGCTTGATGCGGTTGTAGCTGCGATGAGCAAACTGGGTTATGAGGACATTAGGTTAATCATAGCTGAAACTGGGTGGCCCAATGCCGGTGACCTTAATCAGTTGGGTGCCAACATCTTTAATTCAGCCCATTATAACCGGCGGCTCATAAGGAGAATGGTTGCAGATCCTCCCCTGGGAACCCCTCGCAGGCCCAATCAATTCATCCCCACATACATTTTTTCATTGTTTAATGAGGATCAAAAGCCTGGACCGGGAACTGAGAGACATTGGGGTTTGTTGTATCCAAATGGAACCAGGGTTTATGAGATTGATCTCACTGGCGAGCTCCAGGATTCGGAGTATAAGCCTCTCCCTCCTCCACCTCCACCCTACACTGGCAAATTGTGGTGTGTTGTAGATGCTAATGCAAATGTTTCTTCCTTGCCGTCTGCTATTAATTATGCTTGCAGTCAGGGAAACAACACCTGCGCTTCCATCCAGCCAGGGAAGCCTTGTTATCAGCCTAACACGGTTATTGATCATGCATCCTATGCCTTCAACAGTTATTGGCAGCAATTCAAGAACTCAGGGGCCACTTGTTACTTTAATGGAGCTGCAACACTAGTCACACAGGACCCCAGTCGTGGAAGTTGCACATACCCATTCACTTGA___CTGATCTGCAGTGTGGAAGCAGACGTTTTTTCTCCATCTGACCTATTTGCAAAACTGTCTCCAGATGTCTGGCTTTGTTGAATGCAGTATTTTTGTCAGTTCTAGTCGTTCAGAAGATTACACTACTGATTCAATTCATTGTAGAAGCACTAAATTTTTTATCTTAAAGGAACTTGTTACATAGCATCCTTGTAATTGATAGCAGGGATTCCTTATATGTATATAGTTATCTATCAGTTTATAGATCCCATATTTCTAGGGATCTCTATAACTGTTGTTCTATCTGTTACTGCACCTCTTTGCAATAGTCTAATGAATAATAAATGCTTTTGAGCTTTCACCATCCATATGTTGATATTTAAGGAAGCATCTCTGTGTTTCCTGGTGATTCTGTGCCTGATGGATCTCTTTGGCTTTGTGGTTAGTTTACTTGTTCGCTGGTGTGTGTTTAGTGGTATCCAATCTGGGTATCATACATTGCAGGAGTGTGCTATCTTGTGTTAA

Fln Alignment:

sp_v1.1_unigene7043___MAIPGSKAFWLLLAIVGVVIHAYAEDYTIGIDYGQLGDNLPSTEEAIHLIQRMKAGRVKIYDTNPEILKALAHTGIKVAVMVKNEDIANVSANQSFADKWVKNNVVYFYPATRINIVLVGNEILSDYSNNQTWYQLVPAMLRIRRALLRYKLHHVKVGTPLAMDVLNTSFPPSSGAFRDDVAETVMKPMLEFLTRTRSYFFIDVYPYFAWSSDPTNISLEYANFGDHDKNYTDPNGLVYTNLLDQQLDAVVAAMSKLGYEDIRLIIAETGWPNAGDLNQLGANIFNSAHYNRRLIRRMVADPPLGTPRRPNQFIPTYIFSLFNEDQKPGPGTERHWGLLYPNGTRVYEIDLTGELQDSEYKXXXXXXXXYTGKLWCVVDANANVSSLPSAINYACSQGNNTCASIQPGKPCYQPNTVIDHASYAFNSYWQQFKNSGATCYFNGAATLVTQDPSRGSCTYPF
D5AAN5______________MPIPAPKVFWLLLAILGVIIHAYAEDYTIGVDYGQLGDNLPSTQEAIHLIQRMKAGRVKIYDTNPEILKALSHTGIKVSVMVKNEDIANVSSNQSFANKWVKNNVVYFYPATRINIILVGNEILSDYSNNQTWYQLVPAMLRIRRALLRYKLHHIKVGTPLAMDVLNTSFPPSSGIFRDDVAETVMKPMLEFLSRTRSYFFIDVYPYFAWSSDSNNISLEYANFGDHDKNYTDPNGLVYTNLLDQQLDAVIAAMSKLGYEDIRLVIAETGWPNAGDLNQLGANIFNAAHYNRRIIRRMLADPPLGTPRRPNQFIPTYIFSLFNENQKTGLGTERHWGLLYPNGSRLYEIDLTGELQDSEYKPLPPPPPPYKGKLWCVVDANANVSALPSAITYACSQGNNTCVAIQPGKPCYQPNTVIDHASYAFNSYWQQFKNSGGTCYFNGAATLVTKDPSSKICRYPF

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
43	25	25	50		1.0
45	20		40	40	1.0
46	14			42	1.0
49	85		14		0.993533
50			14	85	0.993533
349	90		10		0.90298
497			9	90	0.90298
998	88		11		0.923564
1037	88		11		0.923564
1125		87		12	0.992554
1134	25			75	1.0
1136			10	90	0.90298
1137			10	90	0.90298
1138			10	90	0.90298
1690		90	9		0.999872
1885	83		16		0.999991

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain