SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6947

Length: 965 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene6947

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNA m5u methyltransferase, putative	-	-	50%
FL-Next	sp=Zinc finger CCCH domain-containing protein 24; Arabidopsis thaliana (Mouse-ear cress).	-	-	51%
Blast2go	protein	-	-	59%

Source	InterPros	Term	Type	e value	Identity
Blast2go	(Uracil-5)-methyltransferase	IPR010280	-	0.0	59%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q8L7S3

Fln msg: your sequence is shorter than subject: 246 - 809

Fln protein: VGIEMSAPAVADAQRNAEINGIKNCKFVCAKAEDVIDSLLKEYLEMPAEMASDISDNATDKNIDNISKKSASEYGTQGNNSPVSGNDTQIKGDTIAKETEHIGNISSKSPGTSTETNELTENKKEANIMKRFREVVVIVDPPRCGLHPVVTKALRTQPWLRRLVYISCNPETLVANAIELCTPSTGKVEKVKGRRGGYRHMGNAGHARQRAKSMPVSEPFCPVKAMAVDLFPHTPHCEMVMLLER*

Protein Length: 247

Fln nts: TTGTAGGGATAGAAATGAGTGCCCCTGCTGTTGCAGATGCTCAAAGAAATGCAGAAATCAATGGCATAAAAAATTGCAAGTTTGTTTGTGCCAAGGCAGAGGATGTGATAGATTCATTGTTGAAGGAGTATCTCGAAATGCCAGCAGAGATGGCATCAGATATCTCAGATAATGCCACTGACAAGAATATTGACAATATATCCAAGAAGAGTGCCAGTGAATATGGCACACAGGGTAATAATTCTCCTGTGTCTGGAAATGACACACAAATAAAAGGTGACACTATTGCCAAGGAAACTGAACATATTGGTAACATCAGCAGCAAGTCTCCAGGAACCTCCACTGAGACAAATGAGCTTACTGAAAACAAGAAAGAAGCCAATATTATGAAGCGGTTTAGAGAAGTAGTTGTTATAGTTGATCCTCCACGTTGTGGTCTCCACCCTGTTGTCACCAAGGCTCTTAGAACTCAACCCTGGTTGCGTAGGCTAGTTTATATCTCATGTAATCCAGAGACGTTAGTAGCTAATGCAATCGAACTTTGTACACCATCAACTGGTAAAGTGGAGAAAGTAAAGGGGAGGAGAGGTGGATACAGACACATGGGCAATGCAGGTCATGCTAGGCAGCGTGCTAAATCCATGCCGGTTTCGGAACCATTTTGCCCAGTCAAGGCGATGGCTGTAGATTTGTTTCCTCATACACCACACTGCGAGATGGTGATGCTGTTGGAAAGATAG___GATTTGGCTTTTGAGGACATTTCTTCTGGAAATTCTTTTTCTTCTCATTGTTTGCATTTTTTAGCCATAGCCAACTGGTCCAAATCTCTTATGGGAGAATATGGTTGGCCGTGTGCAATGCGAATGAGTCTTAAGTTATGCAAATGTGGCCCTCTTGAAGTGCATTTTCAGATTTTGCTAGTGTGGCAAAATCAGTAACCCGCTTTAATTAGATTTTTTGTGAGC

Fln Alignment:

sp_v1.1_unigene6947___VGIEMSAPAVADAQRNAEINGIKNCKFVCAKAEDVIDSLLKEYLEMPAEMASDISDNATD---KNIDNISKKSASEYGTQGNNSPVSGNDTQIKGDTIAKETEHIGNISSKSPGXXXXXXXXXXXXXXANIMKRFREVVVIVDPPRCGLHPVVTKALRTQPWLRRLVYISCNPETLVANAIELCTPSTXXXXXXXXXXXXYRHMGNAGHARQRAKSMPVSEPFCPVKAMAVDLFPHTPHCEMVMLLER
Q8L7S3______________IGIEMNASAVADAERNATINGISNCKFICSKAEDVMSSLLKQYLDVTQMEEAKPLSNANDDLNKQIPSTEEMTNSEH-VADQNLPPSNTQVEELQDNEQKDSSSLEPEKTTKP--------------------QFKNVVAIVDPPRSGLHPAVIKALRTHPRLKRLVYISCNPETLVANAIELCTPSFDEPDRGNKNYRGRKKIGIAALARHRAKSMPTSEAFRPVKAMAVDLFPHTDHCEMVMLLER

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
887		33		66	1.0
925			66	33	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain