SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6540

Length: 1493 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene6540

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Brassinosteroid receptor n=1 Tax=Pisum sativum RepID=Q76FZ8_PEA	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	brassinosteroid receptor	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	91%

Source	GOs	Term	Type	Identity
Blast2go	pollen exine formation	GO:0010584	Biological Process	91%
Blast2go	brassinosteroid homeostasis	GO:0010268	Biological Process	91%
Blast2go	positive regulation of flower development	GO:0009911	Biological Process	91%
Blast2go	detection of brassinosteroid stimulus	GO:0009729	Biological Process	91%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	91%
Blast2go	response to UV-B	GO:0010224	Biological Process	91%
Blast2go	tapetal cell differentiation	GO:0048657	Biological Process	91%
Blast2go	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	91%
Blast2go	protein heterodimerization activity	GO:0046982	Molecular Function	91%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	91%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	91%
Blast2go	protein complex	GO:0043234	Cellular Component	91%
Blast2go	endosome	GO:0005768	Cellular Component	91%
Blast2go	plasma membrane	GO:0005886	Cellular Component	91%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPH3

Fln msg: your sequence is shorter than subject: 302 - 360

Fln protein: NADSLIGSGGFGDVYKAQLKDGTVVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKIGEERLLVYEYMRWGSLDTVLHNQMKGGIKLDWSARKKIAIGAARGLAFLHHSCIPHIIHRDMKSSNVLLDENLEARVSDFGMARLMNAMDTHLSVSTLAGTPGYVPPEYYQSFRCTTKGDVYSYGVILLELLTGKQPTDSVDFGDNNLVGWVKQHAKLKISDVFDPDLMKDPSLEVDLLQHLRIACECLDDRPWRRPTMIQVLAMFRELQKDDEDTELDSFSLVDVNVEELPDQQV*

Protein Length: 303

Fln nts: CAATGCAGATAGTTTGATTGGTTCGGGAGGATTTGGGGATGTATACAAAGCCCAGCTGAAAGATGGAACTGTTGTGGCAATCAAGAAACTTATTCATGTAAGTGGACAAGGAGATCGAGAATTCACAGCAGAAATGGAAACTATTGGTAAAATCAAACACCGGAATCTGGTTCCTCTGCTTGGCTACTGCAAAATTGGAGAAGAGAGACTACTTGTCTACGAATATATGCGTTGGGGAAGCTTGGACACTGTCTTACATAATCAGATGAAAGGAGGCATTAAACTTGATTGGTCTGCAAGGAAGAAGATTGCAATTGGGGCAGCTCGAGGTTTGGCTTTTCTTCACCATAGTTGCATTCCTCACATTATACACAGAGACATGAAATCAAGCAATGTCCTTCTTGACGAAAATCTTGAAGCGAGAGTTTCAGACTTTGGAATGGCAAGGCTCATGAATGCAATGGACACCCATCTGAGTGTCAGCACACTTGCAGGCACACCGGGATATGTTCCTCCAGAGTATTACCAGAGTTTTAGATGCACAACAAAGGGCGATGTTTACAGCTATGGAGTAATCTTGTTAGAGCTTCTCACAGGGAAACAGCCTACTGATTCTGTAGACTTTGGAGACAATAATCTGGTTGGATGGGTCAAACAACATGCCAAATTGAAAATCTCAGATGTTTTTGATCCAGACCTGATGAAAGATCCAAGCTTGGAAGTGGATCTACTTCAACATCTTAGAATTGCTTGTGAATGCTTGGATGATCGTCCTTGGCGTAGGCCTACTATGATTCAAGTATTGGCCATGTTTAGAGAGCTTCAAAAGGATGATGAGGACACGGAGCTTGACAGCTTCTCACTGGTAGATGTAAATGTTGAAGAACTTCCTGATCAACAAGTATGA___TCCCGTATTTTCTTCCCTATCATTGTTCACTCAATGCACAGATGTAAATGCAAAGAAAGCTCTTGAATGACACCTTTTTTTTGGCTCCTCCCTAAACTACCCCGCAGCTGTTTCTTTCTTTAGAGGATCAACAAGTATTTGCTCATCAAGCTCAAATACAATGGCACATATTTGCACCTTAGTCCTACCAAATGTAGATATTGAAGGAAGTTCCTAGGTCACTGTCAGCTGTTTAAGCTTTTTTCCTTCTCTTAATTCTTTCAATGCTGTCTTCTCTCTTTGTTCCCAGAGTGTGGACATTAGTCTGTTGCTTTTGGCACCCATAAGCACTATTAGCTTATCCGCAGCTGCATGTGCATGGTTTCAACGCTGAGATTTGCTTCTCATTGAATAGCTCTCAATCCTGCAGAGTGTTTGATAGAGGCTTTGGATTCTAATTATGGCAATGGTTTGGGATTTGTGTTACTGTTTTGTCTCTCTCAAATCAGAGAGATTGATGGGTGCTATGAATTCTACCTTGAACAGTGGAATTTATGCATTGTTCATTTTGAATGTACAGATAAATTAATAGAAATTATGGATTACC

Fln Alignment:

sp_v1.1_unigene6540___LIGSGGFGDVYKAQLKDGTVVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKIGEERLLVYEYMRWGSLDTVLHNQMKGGIKLDWSARKKIAIGAARGLAFLHHSCIPHIIHRDMKSSNVLLDENLEARVSDFGMARLMNAMDTHLSVSTLAGTPGYVPPEYYQSFRCTTKGDVYSYGVILLELLTGKQPTDS--VDFGDNNLVGWVKQHAKLKISD-VFDPDLMKDPSLEVDLLQHLRIACECLDDRPWRRPTMIQVLAMFRELQKD
B8LPH3______________IIGTGGYGTVYKLVIDEHTVFAIKRLTRNSIDQQRGFERELDAMGDIKHRNVVTLRGYYSSSHVNLLVYDLMQNGSLDGILHSRSPNKVSLDWAARNKIALGSARGIAYLHHDCIPHIIHRDIKSSNILLDEEMEARISDFGLATLINPDQTHVS-TIVAGTFGYLAPEYVETGRATEKGDVYSYGVVLLELITGKRPTDEAFVEKG-NNIVTWIRALVEDGCEEHAFDPDLV-DVLTRREMKEAFIVAYNCLNQNPSERPTMAQVVKMLEEIKLD

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
399			12	87	0.992554
402			12	87	0.992554
405	87		12		0.992554
407		14	85		0.993533
408	85			14	0.993533
409	85			14	0.993533
410	85		14		0.993533
411	85		14		0.993533
416		14	85		0.993533
418	85	14			0.993533
419			85	14	0.993533
546		75		25	0.996473
547	75		25		0.996473
548	75		25		0.996473
549	75		25		0.996473
1051	14	85			0.993533
1053		85	14		0.993533
1054	85		14		0.993533
1077	77		22		0.999999
1079	77	22			0.999999
1080			22	77	0.999999
1090	77		22		0.999999
1092		22		77	0.999999
1093		77		22	0.999999
1094		77	22		0.999999
1141		16		83	0.999991
1142		16		83	0.999991
1146		9	63	27	1.0
1465	83	16			0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain