SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6483

Length: 425 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

>sp_v1.1_unigene6483
ATGGGAAGGCCATCGATCTGCAATACGAGGAGGGCAACGTAGTCGAGTGGGCGGTGCCGCTAATCAAAGCCAATGACATCTCGGCCATCCTAGACCCCACATTGGAGCCGCCCCTGAACTATGAGGCGCTGTACAAAATAGCCCGCGTCGCCTGCCGGTGCGTCAGAATGCGCGGCAAGGAGCGGCCCTCCATGGACAAAGTGACAACGGAGCTCGAACGAGCACTGGCGTTGCTCATGGGGACGCCCTGCGACGACCAGCCGATTCTCCCCACCGAAGTTGTTTTGGGCAGCAGCCGATTGCATAGAAGGTCTTCGGGATCTCATGATTCGGAGCTCCGTGCGCCTTCGTGGATCACGTTTCCCAGCGTTGCTTCTTCTCAGAGGAGAAAGTCATCTGTCTCCGAAGAAAACAGAACGATCACA

Ace file of the UniGene sp_v1.1_unigene6483

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	receptor protein kinase, putative (EC:2.7.11.30)	-	-	1.96182e-44	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%
Blast2go	protein	-	-	1.96182e-44	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of asymmetric cell division	GO:0009786	Biological Process	1.96182e-44	77%
Blast2go	lateral root formation	GO:0010311	Biological Process	1.96182e-44	77%
Blast2go	root cap development	GO:0048829	Biological Process	1.96182e-44	77%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	1.96182e-44	77%
Blast2go	response to cytokinin stimulus	GO:0009735	Biological Process	1.96182e-44	77%
Blast2go	transferase activity	GO:0016740	Molecular Function	1.96182e-44	77%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	1.96182e-44	77%
Blast2go	cell surface	GO:0009986	Cellular Component	1.96182e-44	77%
Blast2go	endocytic vesicle	GO:0030139	Cellular Component	1.96182e-44	77%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.96182e-44	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRZ4

Fln msg: Distance to subject end: 132 aas, your sequence is shorter than subject: 141 - 511

Fln protein: GKAIDLQYEEGNVVEWAVPLIKANDISAILDPTLEPPLNYEALYKIARVACRCVRMRGKERPSMDKVTTELERALALLMGTPCDDQPILPTEVVLGSSRLHRRSSGSHDSELRAPSWITFPSVASSQRRKSSVSEENRTIT

Protein Length: 142

Fln nts: ATGGGAAGGCCATCGATCTGCAATACGAGGAGGGCAACGTAGTCGAGTGGGCGGTGCCGCTAATCAAAGCCAATGACATCTCGGCCATCCTAGACCCCACATTGGAGCCGCCCCTGAACTATGAGGCGCTGTACAAAATAGCCCGCGTCGCCTGCCGGTGCGTCAGAATGCGCGGCAAGGAGCGGCCCTCCATGGACAAAGTGACAACGGAGCTCGAACGAGCACTGGCGTTGCTCATGGGGACGCCCTGCGACGACCAGCCGATTCTCCCCACCGAAGTTGTTTTGGGCAGCAGCCGATTGCATAGAAGGTCTTCGGGATCTCATGATTCGGAGCTCCGTGCGCCTTCGTGGATCACGTTTCCCAGCGTTGCTTCTTCTCAGAGGAGAAAGTCATCTGTCTCCGAAGAAAACAGAACGATCACA

Fln Alignment:

sp_v1.1_unigene6483___AIDLQYEEGNVVEWAVPLIKANDISAILDPTLEPPLNYEALYKIARVACRCVRMRGKERPSMDKVTTELER
B8LRZ4______________AIDVQYSPPSIVDWAMPLIRQNKILELYDPRLSPPKNLNTIKHMALIAARCVRSTEERRPSMNEVVEGLKQ

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
206		66		33	0.997452
207	66		33		0.997452
208	66		33		0.997452
209		66	33		0.997452
301		20		80	0.995493
364	20	80			0.995493
390	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain