SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene6392

Length: 1104 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene6392

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative auxin response factor 6 n=1 Tax=Amborella trichopoda RepID=E0WD84_AMBTC	-	-	87%
FL-Next	tr=Putative auxin response factor 3/4; Pinus pinaster (Maritime pine).	-	-	49%
Blast2go	auxin response	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	flower development	GO:0009908	Biological Process	92%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	92%
Blast2go	cellular transcription, DNA-dependent	GO:0006350	Biological Process	92%
Blast2go	binding	GO:0005488	Molecular Function	92%

Source	InterPros	Term	Type	e value	Identity
Blast2go	B3 DNA binding domain	IPR003340	-	0.0	92%
Blast2go	DNA-binding pseudobarrel domain	IPR015300	-	0.0	92%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: E1UHY2

Fln msg: Distance to subject end: 678 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 190 - 919

Fln protein: MRTGFSQQHREGEKRSLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPNLPPQLICQLHNVTLQADVETDEVYAQMTLQPLNTQEQKESYLAPDIGTQSRQPTNYFCKTLTASDTSTHGGFSIPRRAAEKVFPPLDFTQQPPVQELVARDLHDNEWKFRHIYRGQPKRHLLT

Protein Length: 191

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGGTGATGGTGGCATTGGCGTATCATCCATCATCGAGGGGGAGGAGGAGGAGTAACAGTGCCTTAAACGTCGTGACCTTGGCTGTCACTCATTTTCTTTCCTTTCTTCCATATTCATTTTTATTAGTTCCACTTCGCCCTTTGCTCTGTTACAGCGAGGGTTTGATGACGACGAAGAAGAAGCTTCTCTGAAGGGCAAGGTGCGGTGGGGACTAGATTCGATAGCGGCTCTGGGTTTAAAGTTCTGAATTAAACGGGCTTTGGTTAAAAAGTTAAAAAAGGTTGGAATTTGAGCAGGAGGAGCTGATAGAGTGTTATTATCGGAACGGATGAAATAATTGAAGCCAAAGGGGCTTATGTGTGTGTTTTGCGGCCTTCTGCGAGTAAGGGGAAATGGAATTATTGGAGTGAAGTAGGTGTTCTTGGAGAAATATGCGGGGAGCTCATAATAACAGCAATAATAGTGAGAAAGCTTGCGTGTTGAGATCCCTCTGAGCTTCGCTTTTCAGA_-_ATGAGGACCGGCTTCTCCCAGCAGCATCGGGAAGGGGAAAAGAGGAGTCTCAATTCGGAGCTATGGCATGCATGTGCTGGGCCACTTGTGTCACTACCTGCTGTTGGGAGCCGTGTTGTATATTTTCCTCAAGGTCACAGTGAGCAGGTGGCTGCCTCAACAAACAAGGAGGTTGATGCTCACATTCCTAACTATCCAAATCTTCCACCACAATTAATCTGCCAGCTACACAATGTTACTCTGCAGGCAGATGTGGAGACAGATGAAGTATATGCTCAAATGACATTACAGCCCTTAAACACGCAAGAGCAAAAGGAGTCTTATCTAGCTCCTGATATTGGCACGCAAAGCAGACAGCCAACTAATTACTTCTGTAAAACGCTAACAGCAAGTGACACCAGCACTCATGGTGGATTCTCAATTCCACGCCGTGCTGCTGAGAAAGTGTTTCCACCACTGGATTTCACTCAGCAGCCTCCTGTTCAAGAGCTTGTTGCTAGGGATCTTCATGACAATGAGTGGAAATTTCGGCATATTTATCGGGGTCAGCCCAAGCGGCATCTGCTGACA

Fln Alignment:

sp_v1.1_unigene6392___EGEKR-------SLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVA------------------------------------ASTNKEVDAHIPNYPNLPPQLICQLHNVTLQADVETDEVYAQMTLQPLNTQEQKESYLAPDIGTQSRQPTNYFCKTLTASDTSTHGGFSIPRRAAEKVFPPLDFTQQPPVQELVARDLHDNEWKFRHIYRGQPKRHLLT
E1UHY2______________DGDKRIGVETGSSVCPELWHACAGPLISLPPKGSRVVYFPQGHLEQIADNELHRGGRGSFLNVNHAAAPMAEEASSAAALNIPPSSISQAVNQQMLSY-KLPPQILCRVLNVNLHADQEMDEVYAQLTLVP--DSEKNEKCMEEQLSVPPSSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGREWRFRHIFRGQPRRHLLT

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
174	40	60			1.0
177			40	60	1.0
178			40	60	1.0
423		25	75		1.0
425	75			25	1.0
426	75		25		1.0
427	25			75	1.0
428		25		75	1.0
429	75	25			1.0
434	75			25	1.0
437		25	75		1.0
439	75			25	1.0
440		25	75		1.0
441	25			75	1.0
499			25	75	1.0
560	87		12		0.992554
566			87	12	0.992554
567		12	87		0.992554
569	85	14			0.993533
572			85	14	0.993533
574	14		85		0.993533
575	85		14		0.993533
576	85			14	0.993533
577	85		14		0.993533
579		12	87		0.992554
583	87	12			0.992554
584		12	87		0.992554
630	57	42			1.0
838	66		33		1.0
840			66	33	1.0
1034			80	20	0.995493
1079	33	66			0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
65	77	GGA GGA GGA GGA G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain