SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5811

Length: 1432 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5811

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNA lariat debranching enzyme, putative n=1 Tax=Ricinus communis RepID=B9RNS1_RICCO	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	lariat debranching enzyme	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	embryo development	GO:0009790	Biological Process	0.0	75%
Blast2go	RNA lariat debranching enzyme activity	GO:0008419	Molecular Function	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Metallophosphoesterase domain	IPR004843	-	0.0	75%
Blast2go	Lariat debranching enzyme, C-terminal	IPR007708	-	0.0	75%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AEH6

Fln msg: Distance to subject end: 33 aas, your sequence is shorter than subject: 401 - 434

Fln protein: MKIAIEGCAHGDLDNIYATLQHLEELENIKIDLLICCGDFQAVRNENDLESMACPVKYRTMNTFWKYYSGEEIAPVPTIFVGGNHEASNYLWELYYGGWVAPRIFFMGFAGVIWFGNIRIGGLSGIFKSRNYYSGHYERAPYNESDIRSIYHVREYDVQKLMQIEEPLDIFISHDWPRGITDFGNSEQLLRHKPFFENEIKDKTLGSQPAEELLKKLKPSYWFSAHLHTKFAAVVQHGENGPITKFLALDKCLPGHNFLQVIEIESDAGPHEIHYDEEWLAITQAYNPYFPLSRKSVQLIAERPDLGFHRQCVRKRMEEINMKPFDFTMTVPPYDPTQGKTANPASLGHVRNPQTEAFLQLLDLHYLLDSAPEHATPNRSPVSLMIQVKDENEIVLDDADD

Protein Length: 402

Fln nts: ATGGGGAGCGTCGGTAAGAATAGTGGCCTGGCTACACCAGCGATTGGACTACACTAAACTGGTCATTGTCCTCCTCGACTGCCATCCTCGCAGCGGCAACCTGTCGAGCAACGATCTTTTCTTTTTTTCAACCAGCGTTTCTCTTCAGTGGAACCGGAAGTATCCTTCAATTTGGACAGCTAGTTGCAACATTTTAAAATTTGCTCATTTATTCATTGCAGTTCAGCC_-_ATGAAGATTGCAATTGAAGGATGTGCCCATGGGGATCTTGACAACATTTATGCAACATTGCAGCACTTGGAAGAGTTGGAAAATATAAAGATCGATCTTCTAATCTGTTGTGGTGACTTCCAGGCTGTTAGAAATGAAAATGATCTGGAATCTATGGCTTGCCCTGTCAAATATCGTACTATGAACACCTTCTGGAAATATTATTCAGGGGAGGAAATAGCACCAGTTCCAACGATATTTGTCGGAGGAAATCACGAGGCATCAAATTATCTGTGGGAACTTTACTATGGAGGATGGGTTGCACCAAGGATATTCTTTATGGGGTTTGCTGGGGTCATCTGGTTTGGAAATATTCGCATTGGTGGCCTTTCTGGCATTTTCAAATCACGCAATTATTATTCAGGGCATTATGAAAGGGCACCTTACAATGAGAGTGATATCAGGTCTATATATCATGTGCGTGAATATGATGTTCAGAAGCTTATGCAAATTGAGGAGCCTCTAGATATATTTATTTCACATGATTGGCCTCGTGGTATAACCGACTTTGGAAATTCAGAGCAGTTACTTCGTCACAAGCCATTTTTTGAAAATGAGATAAAGGACAAGACTTTGGGGAGTCAGCCTGCTGAAGAACTTTTGAAAAAGCTGAAGCCTTCATATTGGTTCTCTGCACATTTGCACACTAAATTTGCAGCTGTTGTTCAACATGGGGAGAATGGACCTATCACAAAATTTCTTGCATTGGATAAGTGTCTTCCTGGCCACAATTTTCTCCAGGTTATTGAAATAGAATCTGATGCAGGGCCACATGAGATCCATTATGATGAAGAATGGCTTGCAATAACACAAGCATACAATCCTTATTTTCCTTTAAGCCGAAAATCTGTACAGTTGATAGCAGAACGGCCAGACCTGGGATTCCATCGCCAGTGTGTGAGAAAGCGTATGGAAGAAATCAACATGAAGCCTTTTGATTTTACAATGACAGTCCCACCTTATGATCCCACCCAAGGAAAGACAGCCAATCCAGCATCTCTTGGTCATGTTCGTAACCCACAAACAGAGGCATTTTTACAGCTACTAGATTTGCATTACCTTCTGGATTCTGCACCTGAGCATGCTACACCAAATAGAAGCCCGGTGTCTTTAATGATACAAGTCAAGGATGAAAATGAAATTGTACTAGATGATGCCGATGATG

Fln Alignment:

sp_v1.1_unigene5811___MKIAIEGCAHGDLDNIYATLQHLEELENIKIDLLICCGDFQAVRNENDLESMACPVKYRTMNTFWKYYSGEEIAPVPTIFVGGNHEASNYLWELYYGGWVAPRIFFMGFAGVIWFGNIRIGGLSGIFKSRNYYSGHYERAPYNESDIRSIYHVREYDVQKLMQIEEPLDIFISHDWPRGITDFGNSEQLLRHKPFFENEIKDKTLGSQPAEELLKKLKPSYWFSAHLHTKFAAVVQHGENGPITKFLALDKCLPGHNFLQVIEIESDAGPHEIHYDEEWLAITQAYNPYFPLSRKSVQLIAERPDLGFHRQCVRKRMEEINMKPFDFTMTVPPYDPTQGKTANPASLGHVRNPQTEAFXXXXXXXXXXDSAPEHATPNRSPVSLMIQVKDENEIVLDDADD
D5AEH6______________MKIAIEGCAHGDLDNIYATLQHLEESENIKIDLLICCGDFQAVRNENDLESMACPVKYRTMNTFWKYYSGEEIAPVPTIFVGGNHEASNYLWELYYGGWVAPRIFFMGFAGVIWFGNIRIGGLSGIFKSHNYYSGHYERAPYNNSDIRSIYHVREYDVHKLMQIEEPLDVFISHDWPRGITDFGNSEQLLRHKPFFENEIKSKTLGSQPAEELLKKLKPSYWFSAHLHTKFAAVVQHGENGPITKFLALDKCLPGHNFLQVIEIESDAGPHEIRYDEEWLAITQAYNPYFPLSRKSVQLMAELPDLGYHRQHVRNCMKEINMKPFDFTMTVPPHDPTQGKTASPASLGHVRNPQTEAFLQLLDLYYLLDYAPEHATPNRSPVSSMIRVKDENEIVLDDADD

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1115	12		87		0.992554
1119	87		12		0.992554
1186	25		75		0.996473
1240		33		66	0.997452
1285		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain