SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5806

Length: 613 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5806

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	dicer-1, putative (EC:3.1.26.3); K11592 endoribonuclease Dicer [EC:3.1.26.-]	-	-	70%
FL-Next	sp=Endoribonuclease Dicer homolog 1; Oryza sativa subsp. japonica (Rice).	-	-	65%
Blast2go	dcl1	-	-	80%

Source	ECs	Term	Type	e value	Identity
AutoFact	Hydrolases, Acting on ester bonds, Endoribonucleases producing 5'-phosphomonoesters.	EC:3.1.26.-	-	0.0	70%

Source	GOs	Term	Type	Identity
Blast2go	embryonic pattern specification	GO:0009880	Biological Process	80%
Blast2go	suspensor development	GO:0010098	Biological Process	80%
Blast2go	production of lsiRNA involved in RNA interference	GO:0010599	Biological Process	80%
Blast2go	mRNA cleavage involved in gene silencing by miRNA	GO:0035279	Biological Process	80%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	80%
Blast2go	production of miRNAs involved in gene silencing by miRNA	GO:0035196	Biological Process	80%
Blast2go	production of ta-siRNAs involved in RNA interference	GO:0010267	Biological Process	80%
Blast2go	virus induced gene silencing	GO:0009616	Biological Process	80%
Blast2go	cytokinesis	GO:0000910	Biological Process	80%
Blast2go	protein binding	GO:0005515	Molecular Function	80%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	80%
Blast2go	double-stranded RNA binding	GO:0003725	Molecular Function	80%
Blast2go	nuclear dicing body	GO:0010445	Cellular Component	80%

Full-Lengther Next Prediction

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
300			33	66	0.997452
301		66		33	0.997452
303			33	66	0.997452
306	33		66		0.997452
308	66	33			0.997452
309	66			33	0.997452
313	33		66		0.997452
314		66	33		0.997452
315		33		66	0.997452
317			66	33	0.997452
318	33		33	33	0.997753
319		33	33	33	0.997753
320	33		66		1.0
321		66		33	0.997452
322	33		33	33	0.997753
323		33	66		1.0
476	87			12	0.992554
478	12			87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain