SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5798

Length: 988 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene5798 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GTG2 (GPCR-TYPE G PROTEIN 2) [Arabidopsis thaliana]	-	-	78%
FL-Next	Isoform 2 of GPCR-type G protein 2 OS=Arabidopsis thaliana GN=GTG2	-	-	84%
Blast2go	gtg2 (gpcr-type g protein 2)	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	87%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	87%
Blast2go	GTP binding	GO:0005525	Molecular Function	87%
Blast2go	GTPase binding	GO:0051020	Molecular Function	87%
Blast2go	abscisic acid binding	GO:0010427	Molecular Function	87%
Blast2go	microsome	GO:0005792	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Blast2go	GPCR 89-related	IPR015672	-	0.0	87%

Full-Lengther Next Prediction

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
624		45		54	1.0
627		45	45		1.0
764			84	15	0.999986
765		84	15		0.999986
767	84		15		0.999986
768			84	15	0.999986
769	84		15		0.999986
771		15	84		0.999986
776		15		84	0.999986
780	7		15	76	0.999983
785	7			76	0.999983
786	76	15	7		0.999983
788	15			84	0.999986
790	84		15		0.999986
797	10	70		20	0.999998
798		80	20		0.999996
800		70	30		1.0
801		10		90	0.90298
802		10	90		0.90298
805			10	70	0.999998
806		20	10	70	0.999998
807	20			80	0.999996
808		10	20	70	0.999998
809	10	90			0.90298
811	20		10	70	0.999998
812	30	70			1.0
813		80	20		0.999996
814			30	70	1.0
816		22	77		0.999999
817	88	11			0.923564
818	66	33			1.0
819		12	87		0.992554
821		87		12	0.992554
822	71		28		1.0
825	40		60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain