SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5778

Length: 1041 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5778

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNA polymerase II ctd phosphatase, putative (EC:3.1.3.16)	-	-	72%
FL-Next	sp=RNA polymerase II C-terminal domain phosphatase-like 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	79%
Blast2go	protein	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of abscisic acid mediated signaling pathway	GO:0009788	Biological Process	83%
Blast2go	response to salt stress	GO:0009651	Biological Process	83%
Blast2go	protein C-terminus binding	GO:0008022	Molecular Function	83%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NLI interacting factor	IPR004274	-	0.0	83%
Blast2go	HAD-like domain	IPR023214	-	0.0	83%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q8LL04

Fln msg: Separated hits, possible frame ERROR between 364 and 381, your sequence is shorter than subject: 279 - 1241

Fln protein: AFLILGMWTKLRPGIWNFLDRASKLYELHVYTMGNRVYATEMAKVLDPTGTLFAGRVISKGDEADLDGDDRLPKSKDLDGVLGMESAVVIIDDSARVWPHHRHNLILVERYMYFPCSRRQxxxxxxxSLLEADVDERPEDGTLASSLAVIEKIHHNFFSNTQLHEVDVREFLAAEQQKILKDCKVVFSRVFPVGEAQPHLHPLWQMAEQFGAVCTTQIDDEVTHVVALAPGTDKVNWALATGRYVVYPGWLEASALLYRRANERDFSIAMNHFPCPPH*

Protein Length: 280

Fln nts: CGCTTTCCTCATATTGGGAATGTGGACTAAATTGCGGCCTGGCATTTGGAATTTTTTGGATAGGGCAAGCAAGTTGTACGAACTACATGTTTATACAATGGGCAACAGAGTTTATGCCACAGAGATGGCCAAAGTACTTGATCCCACAGGAACTTTATTTGCAGGACGTGTTATTTCAAAGGGTGATGAGGCCGATCTGGATGGAGATGATAGGCTACCTAAAAGTAAAGATCTGGACGGTGTTTTGGGAATGGAATCTGCAGTAGTAATTATCGATGATTCTGCAAGGGTTTGGCCTCATCATAGACATAATTTAATTTTGGTGGAAAGATACATGTATTTTCCCTGTAGTAGGCGCCAATTxxxxxxxxxxxxxxxxxxATCACTCTTAGAAGCAGACGTTGATGAGAGGCCAGAAGATGGAACACTGGCATCTTCTTTAGCGGTGATTGAGAAAATTCACCATAATTTTTTCTCGAACACTCAGTTGCATGAAGTGGATGTCCGGGAATTTCTTGCAGCTGAACAACAAAAGATATTAAAAGATTGTAAAGTGGTTTTCAGTAGGGTTTTTCCAGTTGGAGAAGCGCAGCCACATCTTCACCCTTTGTGGCAGATGGCTGAACAATTTGGTGCAGTATGCACAACACAAATTGATGACGAAGTGACTCATGTTGTAGCCCTTGCCCCTGGGACTGACAAGGTGAATTGGGCTTTGGCAACTGGTCGATATGTTGTTTATCCAGGGTGGCTTGAAGCTTCAGCACTACTATACCGTCGAGCAAATGAGAGGGATTTTTCTATAGCTATGAATCATTTTCCATGCCCCCCACATTAATCTAATGAGATTTACTATGCCCAACATGTTCTGGTGGTAATATTGACACTACCGGCAGTGTAAGTAGACATAGTAAAACTCTTTTTAAGATGTAGTAGAATTAACAATCAGAGGGGTTAGTACCTACTGCCAAGACATAAGATGTGCTTGAAAAGGTTGGATGATAATGCAGAAGTCACATCTTGTTATTGGGCCTTTCTGAGTA

Fln Alignment:

sp_v1.1_unigene5778___FLILGMWTKLRPGIWNFLDRASKLYELHVYTMGNRVYATEMAKVLDPTGTLFAGRVISKGDEAD-LDGDDRLPKSKDLDGVLGMESAVVIIDDSARVWPHHRHNLILVERYMYFPCSRRQFxxxxxxSLLEADVDERPEDGTLASSLAVIEKIHHNFFSNTQLHEVDVREFLAAEQQKILKDCKVVFSRVFPVGEAQPHLHPLWQMAEQFGAVCTTQIDDEVTHVVALAPGTDKVNWALATGRYVVYPGWLEASALLYRRANERDFSI
Q8LL04______________FLHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKLLDPKGVLFNGRVISKGDDGDPLDGDERVPKSKDLEGVMGMESSVVIIDDSVRVWPQHKMNLIAVERYLYFPCSRRQFxxxxxxSLLELDRDEVPEEGTLASSLAVIEKIHQNFFSHTSLDEVDVRNILASEQRKILAGCRIVFSRIIPVGEAKPHLHPLWQTAEQFGAVCTTQVDEHVTHVVTNSLGTDKVNWALTRGRFVVHPGWVEASAFLYQRANENLYAI

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
664		85		14	0.993533
666	71		14	14	0.984337
667	71	28			1.0
670		14	85		0.993533
675	85			14	0.993533
678			14	85	0.993533
682	85	14			0.993533
683	14		85		0.993533
685		85		14	0.993533
718			16	83	0.994512
720		16		83	0.994512
722			83	16	0.994512
723		83	16		0.994512
725	83	16			0.994512
728			83	16	0.994512
730			16	83	0.994512
732			83	16	0.994512
733	83		16		0.994512
737		20	80		0.995493
738	20			80	0.995493
810	12	87			0.992554
812	87		12		0.992554
813			12	87	0.992554
837	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain