SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5629

Length: 1172 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5629

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CAF protein n=1 Tax=Arabidopsis thaliana RepID=Q56Y50_ARATH	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	62%
Blast2go	dicer-like protein	-	-	64%

Source	GOs	Term	Type	Identity
Blast2go	embryonic pattern specification	GO:0009880	Biological Process	64%
Blast2go	suspensor development	GO:0010098	Biological Process	64%
Blast2go	production of lsiRNA involved in RNA interference	GO:0010599	Biological Process	64%
Blast2go	mRNA cleavage involved in gene silencing by miRNA	GO:0035279	Biological Process	64%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	64%
Blast2go	production of miRNAs involved in gene silencing by miRNA	GO:0035196	Biological Process	64%
Blast2go	production of ta-siRNAs involved in RNA interference	GO:0010267	Biological Process	64%
Blast2go	virus induced gene silencing	GO:0009616	Biological Process	64%
Blast2go	cytokinesis	GO:0000910	Biological Process	64%
Blast2go	protein binding	GO:0005515	Molecular Function	64%
Blast2go	double-stranded RNA binding	GO:0003725	Molecular Function	64%
Blast2go	nuclear dicing body	GO:0010445	Cellular Component	64%

Source	InterPros	Term	Type	Identity
Blast2go	Ribonuclease III domain	IPR000999	-	64%
Blast2go	Double-stranded RNA-binding	IPR001159	-	64%
Blast2go	Double-stranded RNA-binding-like	IPR014720	-	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC44

Fln msg: your sequence is longer than subject: 261 - 173

Fln protein: MGNSSRSLQSASICEDEDLAELEKILNYKFNNKSLLEEATTHSSMNDTKSGKSYQRLEFLGDSVLSYLVTKHLYWRYPDLDEGTLTSLRSANVDNEKFARASVKHKFYEYLRKKTLPELERNVENFVKAIEDEPESESLHGGNFDPPKVLADILESIAGAVLIDSGHSVDKVWEVFMPLLEPLVTPGTLQQRPVSELQELCQNQKKHFEYRYSQNGNKARVEVLIDGEVVAIGEDQKQGLAQKAAAKHAVNELKEVLNLL*

Protein Length: 262

Fln nts: ATGGGGATTAGTTGTGACAGAGAATTCTTAGCTGTTACTTGAACCTTTCCTTGCATTCCAAGGAATTGTACAATTCAGGTTTTCCGTTTACATAAATTTCCACGGGCACACCGATACCATGGGCACTTTGCATTCTGGCTATTGCTGGGGAACTCTTCCTGTTTCTGGGTTTTGAAACTGAGGATCATATAAT_-_ATGGGGAACTCTTCTCGTTCGCTGCAGTCTGCCAGTATCTGTGAGGATGAGGATCTGGCTGAACTAGAAAAGATTTTAAACTACAAATTCAACAACAAAAGCCTCCTGGAAGAAGCGACAACACATTCATCCATGAATGACACCAAATCTGGTAAATCCTACCAGAGGCTCGAGTTTTTGGGGGATTCTGTTTTAAGTTATCTCGTAACAAAGCATCTCTACTGGAGGTACCCTGACCTTGACGAGGGCACTTTAACTTCCTTGCGTTCTGCCAACGTCGATAACGAGAAGTTTGCAAGAGCATCTGTAAAGCACAAATTTTATGAATACCTGCGCAAGAAGACACTACCCGAGCTTGAACGTAATGTTGAGAACTTTGTCAAAGCCATTGAAGACGAACCTGAATCCGAATCCTTACATGGCGGAAATTTCGATCCTCCGAAAGTTCTAGCGGACATACTGGAATCTATAGCTGGTGCAGTATTGATTGATAGTGGGCATTCTGTAGATAAAGTGTGGGAGGTATTCATGCCCTTGTTGGAACCTCTGGTGACTCCAGGGACGCTGCAGCAGCGTCCCGTGAGTGAACTTCAAGAACTCTGCCAAAATCAGAAGAAACACTTTGAGTACAGATACTCCCAGAACGGCAATAAAGCGAGGGTGGAGGTACTTATCGATGGCGAAGTGGTTGCGATTGGTGAAGACCAGAAACAAGGATTGGCACAGAAAGCGGCCGCTAAACATGCTGTGAACGAACTAAAGGAGGTGCTAAACCTCCTTTAG___ATGCAACTCAACTCAGCTTGCTCTCAAAGCTTTATCTTTAGTCTGTTGGATTCCATTGACTCAACTTATTCTCACATCTTTATCTTTACTATGTTGGATTCCATTTAAGTCTTTTTTGTGCTGTCAACTCAACTGTTTTCACAAATCTTTACTCAAAGTATTTACACATGGTTTGAAAATATATTTTTTCAATTAG

Fln Alignment:

sp_v1.1_unigene5629___LQSASICEDEDLAELEKILNYKFNNKSLLEEATTHSSMNDTKSGKSYQRLEFLGDSVLSYLVTKHLYWRYPDLDEGTLTSLRSANVDNEKFARASVKHKFYEYLRKKTLPELERNVENFVKAIEDEPESESLHGGNFDPPKVLADILESIAGAVLID
D5AC44______________LQSLSVDTEDSLSELEDILKYKFKSKSLLKEAITHSSNNNTES---YEKLEFVGDSVLGYLVTKHLYCAYPKLYQGTLTLLRSRNVDTEKFARVCVKHKFHQYLLLNA-PALQQIIEDFVKDIED--ESKSFRCGDFKPPKVLADIVESIAGAVFVD

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
408	88		11		0.923564
412	10	90			0.90298
414	90		10		0.90298
415		90	10		0.90298
416			10	90	0.90298
563	42		57		1.0
959	14		85		1.0
971		73	26		1.0
1081		37		62	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain