SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5384

Length: 1484 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5384

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Exportin-T, putative n=1 Tax=Ricinus communis RepID=B9S5Q0_RICCO	-	-	2.00386e-43	60%
FL-Next	tr=Exportin-T, putative; Ricinus communis (Castor bean).	-	-	0.0	60%
Blast2go	psd nucleotide and nucleic acid transmembrane transporter trna binding	-	-	4.34403e-43	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	meristem initiation	GO:0010014	Biological Process	4.34403e-43	75%
Blast2go	flower development	GO:0009908	Biological Process	4.34403e-43	75%
Blast2go	tRNA export from nucleus	GO:0006409	Biological Process	4.34403e-43	75%
Blast2go	nucleobase-containing compound transmembrane transporter activity	GO:0015932	Molecular Function	4.34403e-43	75%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9S5Q0

Fln msg: Overlapping hits, possible frame ERROR between 334 and 327, your sequence is shorter than subject: 154 - 988

Fln protein: IIQLLIRAACIHKDILVRKSCVQVFIKLIKNWCTMPNEDEKVPGFRSFIIENFAANCCFYSVLDNAFELRDAHTYALFGEIVVAQKVIYEKCGDDFLYILQGTYSSNSxxxxDLAEKYCLELKLCDVKDTTKSIYKSLVERLRMQQNGSMAFR*

Protein Length: 155

Fln nts: AATAATCCAGTTGCTTATACGTGCTGCTTGCATTCACAAGGACATTCTTGTTAGGAAGTCCTGTGTACAGGTATTCATTAAGCTTATTAAAAATTGGTGCACCATGCCTAATGAAGATGAGAAGGTACCTGGTTTTCGAAGCTTTATCATTGAAAATTTTGCAGCAAATTGTTGCTTCTATAGTGTTCTTGACAACGCATTTGAACTTCGGGATGCACACACTTATGCTCTATTTGGTGAAATTGTTGTTGCTCAAAAGGTCATCTATGAAAAATGTGGGGATGATTTCCTTTACATCTTGCAAGGAACATATTCCAGCAATTCAxxxxxxxxxxxxGATCTTGCTGAGAAGTATTGCTTGGAGCTGAAGCTTTGTGATGTTAAAGATACTACAAAATCTATTTACAAGTCTCTTGTTGAAAGGCTAAGAATGCAGCAGAATGGAAGCATGGCCTTCAGATAGCAGTGGTGTTGCAAGTATGGCTACTGTTGAATACTTACAAATGATCAGCTAATCCAATTTTTGAGACCAGAGGGCTTGGGCTTTTATGTCACCCTTTGCTATGAATATTTGTTTTTCTGATCAATATATGCCTGGAGGTTCTGATTGCTTAATCAAACTGCTCAAATAGTTTGAGTCAATCACAACATTCATCTTCTACCTGTAAAGAGAGCTGAAGAGACTAACAGAAATTGAAACTCTCTGGTTTCTGTTCTGAGAGATAGATGACCAACAGTAGGTAGTACACTTGCATCATGATCATTGGATAGCAGTTACTGGGGATTGAGCTGAAGGTGTAGTTATCAGGGATATCTATGGTCTGCCGTGAGTTTTGGTGTTTCTTCCTGTTCCGTTTCAATCAGATTCATGAGGCAAAGATCATTCTCATGAACAATCATATTGTGGAAGTAAACTTATAGCAGCATTTCAAAGGACCTCTAATGCCTCATGAATTCAAGAGGGTTTGAATGGGAATCTTAGGTTGAGTTTATGGGAATCACACAGTAACAGCTGCTTCAAGCCAGTTTTGACTGAATATAGTTTTTATTAGATTGGTTAATAAGTTTAGAAGGATGTGGGTGAGAAGGGAGTCCGGCAATTTTCCATCATTAGGCCGCAAGAAAGGATAGCGCTTTAGACTATTTGTAGCACAAGAGCCGATATAGACAGTTGGATGGATGTAATAAATATAGATTAAGATATGGTGATATATTTTATATTTATTATCTAGATCATGGCTAATTTATTGGTTATTGCTTATATGCATACATGTGGATGTTGTCAGATAAACACAACTGTTGCTGCCTAGAGCAGCTGCAGTTATGGAAATTTTCCGAGGATAATCTGTGCCTTCAATTGAGGCTGCAAGTAGTAGGCAATTGATATTCATGTTCATCTTGAAAACAGGATGAAATATAAAGCCTAGTAAAAAACACAGGTATGTAATTGAGCATTATATCAACCACATTCTGCACCATGCAATGG

Fln Alignment:

sp_v1.1_unigene5384___IIQLLIRAACIHKDILVRKSCVQVFIKLIKNWCTMPNEDEKVPGFRSFIIENFAANCCFYSVLDNAFELRDAHTYALFGEIVVAQKVIYEKCGDDFLYILQGTYSSNSxxxDLAEKYCLELKLCDVKDTTKSIYKSLVERLRMQQNGSMAFR
B9S5Q0______________LMQMLLHTACNHKDILVRKACVQIFIRLIKDWCVKPYGEEKVPGFQSFIIEAFATNCCLFSVLDKSFEFQDANTFVLFGEIVQAQKVMYEKFGNDFLHFVSKSFQSAHxxxELAQQYCQKLQGSDLK-TLKSFYQSLIENLRLLQNGNLVFR

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
210	20			80	0.995493
225	25			25	0.995533
226		25		25	0.995533
283			33	66	0.997452
435	33		66		0.997452
566		20		80	0.995493
568		80		20	0.995493
569		20		80	0.995493
570	80		20		0.995493
575		20		80	0.995493
576	80	20			0.995493
579			20	80	0.995493
581		20		80	0.995493
583			20	80	0.995493
585		20		80	0.995493
586	20	80			0.995493
587		20		20	0.99255
589		20	80		0.995493
635	83		16		0.994512
636	83			16	0.994512
637			16	83	0.994512
639		16	83		0.994512
640		16		83	0.994512
648	83			16	0.994512
649	83		16		0.994512
655	83			16	0.994512
737	83		16		0.994512
739		80	20		0.995493
999	85			14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain