SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5200

Length: 1650 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene5200 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Auxin response factor, putative	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	auxin response factor 6 8	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	cellular process	GO:0009987	Biological Process	80%
Blast2go	flower development	GO:0009908	Biological Process	80%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Auxin response factor	IPR010525	-	0.0	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRW7

Fln msg: Overlapping hits, possible frame ERROR between 348 and 348, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 197 aas, your sequence is shorter than subject: 550 - 920

Fln protein: N*LFL*NTNCK*H*YSWWISVPRRAAEKVFPPLDFTQQPPVQELIARDLHDNEWKFRHIYRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIRNENGQLLLGIRRANRSQTVMPSLxxSSDSMHIGVLAAAAHATATNSRFTVFYNPRASPSEFVIPLAKYEKAIYHTRVSAGMRFRMLFETEDSSVRRYMGTITGIGDLDTARWPNSQWRSVKVGWDESTAGERQPRVSLWEIEPLTTFLMYPPPYPLSLKRPWPQLQGMASIPGINDDDCKMMKSIMWTGGDNGEQHLQGLNFQGLGMDPWMQMQDRFDSSVAGVQPDMYKSMAAAALQEIRSVDSSKQLLQLQPQQPVQSQQLHCVPQPLIHRQIFQHQQYPQHILQQRAQNLQQQQQSQQTIHQQQAQSTQQQQPHHHILQQQALNVLPQQTQQHVAHHAQNVQQQQSQIHVVQQQIQQQSSQHQVLQQLQQSYVEQKQSTSQQVQCQQQTFKISHAAGALSQTPVSLSDSSISLPSNVSSQPVLADSNANIASHASLSTACPLQSILLSSDASECK

Protein Length: 551

Fln nts: AACTAATTATTTCTGTAAAACACTAACTGCAAGTGACACTAGTACTCATGGTGGATTTCAGTCCCACGTCGTGCGGCCGAGAAAGTGTTTCCTCCACTTGATTTTACTCAACAGCCTCCCGTTCAGGAGCTTATTGCAAGAGATCTGCATGATAATGAATGGAAGTTTCGGCATATCTATAGGGGTCAGCCTAAGAGACATTTATTGACAACAGGATGGAGTGTGTTCGTAAGTGCTAAGAGACTTGTTGCTGGTGACTCAGTCCTGTTCATTAGAAATGAGAATGGACAGCTATTGTTGGGCATTAGAAGAGCGAACAGATCACAAACAGTTATGCCATCATTGxxxxxxTCCAGTGATAGCATGCACATTGGAGTTCTTGCTGCTGCAGCTCATGCTACTGCTACAAACAGTCGATTCACTGTTTTTTACAATCCAAGGGCAAGTCCATCTGAATTTGTTATACCACTTGCCAAGTATGAGAAAGCAATTTATCATACACGAGTTTCAGCAGGGATGCGGTTTCGCATGTTATTTGAGACGGAAGACTCCAGCGTGCGTAGGTACATGGGTACTATAACTGGCATTGGTGACTTGGATACAGCACGCTGGCCAAATTCTCAATGGCGTTCTGTGAAGGTTGGTTGGGATGAATCTACTGCAGGTGAAAGACAACCCCGAGTATCTTTGTGGGAGATTGAGCCTTTGACCACATTCTTGATGTACCCACCACCCTATCCCTTGAGCTTAAAGCGCCCATGGCCACAACTTCAAGGAATGGCTTCTATTCCTGGTATTAATGATGACGATTGCAAGATGATGAAAAGTATCATGTGGACGGGAGGAGATAATGGGGAGCAACATCTTCAGGGCTTGAACTTTCAAGGGCTAGGCATGGATCCTTGGATGCAGATGCAGGATAGATTTGATTCTTCTGTGGCAGGAGTCCAACCAGATATGTACAAGTCAATGGCTGCAGCAGCGTTGCAGGAAATCAGGAGTGTTGATTCTTCAAAGCAGCTTCTGCAATTGCAACCACAGCAGCCTGTTCAGTCACAACAACTTCATTGTGTGCCACAACCACTCATACACAGGCAAATTTTCCAGCATCAACAGTATCCACAACATATTCTTCAACAGCGAGCACAGAACTTACAACAGCAACAGCAGTCGCAACAGACCATACATCAGCAGCAAGCTCAAAGTACGCAGCAACAACAACCACATCATCATATACTTCAGCAGCAAGCTCTAAATGTGTTGCCACAACAAACGCAGCAGCATGTCGCACATCATGCTCAGAATGTGCAGCAGCAGCAATCACAGATTCATGTTGTGCAGCAACAAATACAGCAACAGTCATCACAGCATCAAGTATTACAGCAATTGCAACAGTCTTACGTTGAACAGAAGCAGAGCACTTCTCAGCAAGTACAATGCCAGCAGCAGACATTTAAAATATCACACGCTGCGGGTGCTTTATCACAGACCCCAGTGTCTCTGTCAGATTCGTCAATAAGTTTACCATCTAATGTGTCTTCACAACCAGTCTTGGCTGATTCTAATGCAAATATTGCTTCACATGCATCTTTGTCCACTGCATGCCCTCTTCAAAGCATTTTACTTTCATCTGATGCCAGTGAATGTAAAA

Fln Alignment:

sp_v1.1_unigene5200___SVPRRAAEKVFPPLDFTQQPPVQELIARDLHDNEWKFRHIYRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIRNENGQLLLGIRRANRSQTVMPSLVLSSDSMHIGVLXXXXXXXXTNSRFTVFYNPRASPSEFVIPLAKYEKAIYHTRVSAGMRFRMLFETEDSSVRRYMGTITGIGDLDTARWPNSQWRSVKVGWDESTAGERQPRVSLWEIEPLTT---FLMYPPPYPLSLKRPWPQLQGMASIP
B8LRW7______________SVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGREWRFRHIFRGQPRRHLLTTGWSVFVSYKRLVAGDAVLFLRDENGELRLGIRRASQQQSSVPSSVLSSHGIHSGVLAAVAHAVATKSMFHIFYNPRTSPTEFVIPYHKYVKSFNHS-FSIGMRFKMRFETEDATERRYTGTIVGIGDVDPMRWPNSEWRSFKVGWDEHAAQERQERVSPWEIEPFTSATGLNALPGPRVKRLRTSFPTAPTDLSIP

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
275		16		83	0.994512
283	16		83		0.994512
284		83		16	0.994512
287	16			83	0.994512
294	16			83	0.994512
296		25		75	0.996473
297		25		75	0.996473
298	25		75		0.996473
299	25	75			0.996473
300			25	75	0.996473
303	75	25			0.996473
304	25			75	0.996473
305		25		75	0.996473
308	25			75	0.996473
309		25		75	0.996473
381			20	80	0.995493
461		75		25	0.996473
590		16		83	0.994512
591		16		83	0.994512
592	16		83		0.994512
593	16			83	0.994512
594			12	87	0.992554
597		12	87		0.992554
603	87	12			0.992554
604		87	12		0.992554
875			15	84	0.999986
901			10	90	0.90298
902	10			90	0.90298
903	90	10			0.90298
905		10	90		0.90298
913			90	10	0.90298
914	90	10			0.90298
917		10	90		0.90298
919	10		90		0.90298
920		10		90	0.90298
945		60	40		1.0
947	60	40			1.0
956			40	60	1.0
957		60	40		1.0
960	40	60			1.0
965	60		40		1.0
1081	75		25		0.996473
1324		33		66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
333	344	TGC TGC TGC TGC	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain