SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5089

Length: 1285 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene5089

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PFT1; PFT1 (PHYTOCHROME AND FLOWERING TIME 1); transcription coactivator	-	-	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	pft1 (phytochrome and flowering time 1) transcription coactivator	-	-	58%

Source	GOs	Term	Type	Identity
Blast2go	red, far-red light phototransduction	GO:0009585	Biological Process	58%
Blast2go	response to red light	GO:0010114	Biological Process	58%
Blast2go	jasmonic acid mediated signaling pathway	GO:0009867	Biological Process	58%
Blast2go	regulation of flower development	GO:0009909	Biological Process	58%
Blast2go	positive regulation of defense response	GO:0031349	Biological Process	58%
Blast2go	response to far red light	GO:0010218	Biological Process	58%
Blast2go	defense response to fungus	GO:0050832	Biological Process	58%
Blast2go	positive regulation of cellular transcription, DNA-dependent	GO:0045941	Biological Process	58%
Blast2go	mediator complex	GO:0016592	Cellular Component	58%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LN79

Fln msg: Distance to subject end: 70 aas, your sequence is shorter than subject: 343 - 410

Fln protein: MSSATLPGASTLGLQTTGNTPPGMHVSNMLASGMGSAAISTAQTVLATGQSGLTSPATSVGLVGIGQVAPNVAQSTFATGTNIVGNSSLGVPQVGSSVNASITGAQGVVGLGQSVPGMGHGGMATGSQLGQGLATGSQLGQGLATGSQLGQGLATGSQLGQGGVGMNQNVLSGIGPVGVSSAAGTMVPKSSLPQSIQIGLPGLGAGNSASGNLQLPPNATVAQQPAATQAKYTKVWEGLLGGSRQGKPVPICRLEGYRNISSSDTIAADWPSSMQIIRLISQDHITSKHYQGKADFLIFRPMNSHGFLLQLAEKKLSAVIQLPTQTLLLSTSDKPGRMIGMLF

Protein Length: 344

Fln nts: GTATCTCTGACATCAGGACCCGGTTTGTCTCATGTGACTTCTCCTTCGCTTTTCATAGTACATCACAAGCTGTTCCTGGTCAGTTTTCTTCATCATCTGGTCTTTCCAATCAAGAGATAAAACCAAATGTTGAGGCAGCAGATGGACAGGACTTTAAAACATTTGTCAACAACACATCGCAGCAACTTCGTACTGTAACTGCTCCAGCCACAAATGTAAGCCTGTTGAATAATCTTTCACAAGCACGCCAAGTT_-_ATGAGTTCAGCTACTTTGCCAGGAGCAAGTACATTGGGTCTTCAGACAACAGGCAATACTCCACCGGGTATGCATGTCTCCAATATGTTAGCAAGTGGAATGGGTTCAGCGGCAATATCTACTGCGCAGACTGTTTTGGCTACTGGACAGTCAGGATTGACATCTCCTGCTACCTCTGTTGGCTTGGTTGGAATTGGTCAGGTAGCTCCAAATGTTGCTCAAAGTACATTTGCTACTGGAACTAACATTGTAGGGAATTCAAGCCTTGGTGTTCCACAAGTAGGATCTTCTGTCAATGCCAGTATTACTGGTGCACAGGGAGTTGTTGGCCTGGGACAATCAGTTCCTGGGATGGGCCATGGGGGAATGGCAACAGGATCGCAATTAGGACAAGGACTGGCTACAGGATCACAACTAGGACAAGGACTGGCAACCGGATCACAATTAGGACAAGGACTGGCAACAGGATCACAATTAGGACAAGGTGGAGTTGGAATGAACCAAAATGTACTGTCTGGCATAGGACCTGTTGGAGTAAGCTCTGCTGCAGGAACAATGGTCCCTAAGTCTAGTTTGCCCCAGTCAATTCAGATTGGTTTACCAGGACTAGGAGCAGGTAACAGTGCTTCAGGTAATCTTCAGCTGCCACCAAATGCCACTGTTGCTCAGCAGCCAGCAGCAACTCAGGCAAAGTACACAAAAGTGTGGGAGGGTCTCCTAGGAGGTTCAAGGCAAGGAAAGCCAGTTCCTATTTGTAGACTTGAGGGCTACAGGAATATAAGTTCTTCAGATACAATTGCTGCAGATTGGCCAAGTTCAATGCAAATTATCAGGCTTATTTCCCAAGATCACATAACCAGCAAACACTACCAAGGCAAAGCCGATTTCCTAATATTCAGGCCAATGAACTCTCATGGATTCTTGTTGCAGCTTGCTGAAAAGAAGCTTTCTGCAGTGATCCAGCTCCCTACCCAGACATTGTTGCTATCAACCTCAGACAAGCCAGGCCGAATGATTGGAATGCTTTTCCC

Fln Alignment:

sp_v1.1_unigene5089___QSIQIGLPGLGAGNSASGNLQLXXXXXXXXXXXXXXXKYTKVWEGLLGGSRQGKPVPICRLEGYRNISSSDTIAADWPSSMQIIRLISQDHITSKHYQGKADFLIFRPMNSHGFLLQLAEKKLSAVIXXXXXXXXXXXXDKPGRMIGMLF
B8LN79______________KSIQLGLLGLGAGNSPAGNLSLPSTATVAQPRAATQEKYTKVWEGLLGGSRQGKPVPICRLEGYRNIRSSEIIAADWPSSMQIIRLISQDHITSIHYPGKADFLIFRPLNSHGFLMQLAERKLSAVIQLPTQTLLLSTSDKPSRMCGMLF

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
662	83		16		0.994512
717	16	83			0.994512
754	25		75		0.996473
913	80	20			0.999996
1035	85		14		0.993533
1211	50			50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain