SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene5005

Length: 2442 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene5005
CGTCGTGACCTTGGCTGTCACTCATTTTATCCGAGGGCAAACGAGAGGAGGAAAGATGGAATGGGACAGTGGTTCCGAGATGAGCATGGAGGATGAAGATCACATGCAAATATGTGAGGATGAAGGTTTCTTTGATGAATGATGGAGGACCAGTTCCAATTGCTATGAATAACCTGCTTCATTCTACTCCATGTGGGTTTGCTGTAACAGATGCCCTTGAACCGGATCAGCCGATTATTTATGTAAACGCGGTGTTTGAGTATGTTACTGGTTACAAGGCCGAGGAGATTCTCGGAAGGAATTGCCGGTTTCTACAGTACAGAGGCCCATTTGCACAGAGAAGGCATCCCCTGGTAGACTCCATGGTGGTTCAAGAAATCAGAAGGTGTCTTGATGAAGGTGTTGAATTTCAAGGTGAGCTATTGAACTTTAGAAAGGATGGGACTCCCCTGATGAATAGGCTCCGCTTGACTCCAATTCATGGTGATGATGGGATAATCACACACATTATAGGAATTCAGCTGTTCACTGAAGCAAATATTGACTTGGGTCCTATGCCATTACCCTTTTACAAAGAGGTATCTACTAGATTTGCAGATCGGTCATTGTCCGATCCTTTCTTGTACAGGCCAGCTGTAATTGGACAAGGACATTTCTGCCGTGAAATCTGTGGGATTTTCCAGCTGAGTGACGAGGTTTTAGCACAAAAAATTTTGTCACGGTTGACACCCAGAGATGTTGCATCTGTTGGATCAGCTTGCAAGCGTCTTTATCAATTGACAAAAAATGAGGATCTGTGGCGAATGGTTTGCCAAAATGCATGGGGTAGTGAAACAACACGTGTGTTAGAAACAGTTCCAGGTGCTAAAAGGCTAGGATGGGGTCGCCTTGCAAGGGAGCTGACTACACTTGAAGCTGCTGCATGGAGGAAACTTACAGTTGGAGGGGCAGTTGAACCTTCTCGTTGTAACTTTAGTGCATGTGCTGTTGGAAACAGACTTGTTCTATTTGGTGGGGAAGGGGTCAACATGCAGCCTATGAATGACACATTTGTACTGGACTTGAGTGCGGCAAATCCAGAATGGCGGCATGTAAAAGTGAGTTCTCCTCCTCCAGGTCGGTGGGGCCACACCTTATCGTGCTTGAATGGATCTTGGTTGGTGGTTTTTGGTGGGTGCGGCAGGCAGGGATTACTGAACGATGTTTTCATTCTGGATTTGGATGCTCAGCAGCCTACTTGGCGTGAAGTTTCAGGCTCTGCACCCCCTCTTCCACGATCATGGCATAGTTCCTGCACCCTGGATGGCACAAAATTGGTTGTCTCAGGTGGGTGTGCAGATTCTGGGGTGCTTCTCAGTGATACATTTTTACTGGATCTCACAATGGAGAAGCCTATATGGAAAGAGATACCGGTTTCATGGACTCCACCTTCTAGGTTGGGTCACTCTCTTACTGTCTATGGAGGCCGAAAGATTCTCATGTTTGGTGGCCTAGCCAAAAGTGGGCCTTTGAGGCTGAGGTCAAGTGATGTGTATACAATTGATCTCAGTGAAGAAGAGCCTAAATGGAGATACTTAACAGGAAGTGGGATGCCAGGTGCGGGGAATCCTGGGGGAAAAGCACCTCCACCCAGGCTTGATCACGTGGCTGTGAGTTTACCAGGTGGTAGAGTGCTGATCTTTGGAGGATCCGTGGCTGGTTTGCACTCAGCCTCACAATTATATCTTCTGGATCCTACTGAGGAGAAACCTACATGGAGAATGTTGAATGTTCCTGGACAACAACCAAGGTTTGCTTGGGGCCACAGTACCTGTGTAGTTGGAGGGACCAGGGCTTTAGTGCTGGGCGGCCATACTGGAGAAGAATGGATACTCAATGAATTACATGAGTTGTCCTTAGCAAGCAAACATGGGTTAGAGTAGCAGGCAAACTCACTTTCACCAGATCATTTCCAGAATGGAATGGACAGACAGTCAGAGCAACTGTGATATCTTTTATCATCGATCAGATCATCTATATCAACTGAAAGAAGACAGATTTCAGAGAGTTGCAGAGAGTGTCTTAGTTTAATATTTCATATGCTGCTCACACAGAGGATGTGATTTGGTGGACAGCATATTGTGCTGCTTGATTACGTCCTTTCATGATTAATTAGTAAATTTTACCACCGAAAATCTAAGTTAAAATAAGATAGCCATTTGTGCCTGCGTTGTAGGCAAGTGAGATTTATTCAGCAGTTCGTGATCTAGGTTATCTTAGGGATGATTGTATTTTGTTGTCTGTTATTTTATAGATACTGGGGAACATGTAAGGCTGTATATGTTTGTTTGTTCTGTAGATTATGTCATTGCTAGCAATTGTGTACCATATCTTTCTTTTGCTAGATTGAAATCCTAGATTAGAGTAACTAGCTCGCATGCATGCTTAGAGTACTGATACGAC

Ace file of the UniGene sp_v1.1_unigene5005 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ZEITLUPE n=1 Tax=Mesembryanthemum crystallinum RepID=Q6UEI5_MESCR	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	31%
Blast2go	f-box family protein	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	proteasomal protein catabolic process	GO:0010498	Biological Process	89%
Blast2go	response to red light	GO:0010114	Biological Process	89%
Blast2go	flower development	GO:0009908	Biological Process	89%
Blast2go	entrainment of circadian clock by photoperiod	GO:0043153	Biological Process	89%
Blast2go	protein binding	GO:0005515	Molecular Function	89%
Blast2go	blue light photoreceptor activity	GO:0009882	Molecular Function	89%
Blast2go	cytosol	GO:0005829	Cellular Component	89%
Blast2go	SCF ubiquitin ligase complex	GO:0019005	Cellular Component	89%
Blast2go	nucleus	GO:0005634	Cellular Component	89%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PPX6

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 61 aas, putative chimeric sequence, your sequence is shorter than subject: 610 - 665

Fln protein: MKITCKYVRMKVSLMNDGGPVPIAMNNLLHSTPCGFAVTDALEPDQPIIYVNAVFEYVTGYKAEEILGRNCRFLQYRGPFAQRRHPLVDSMVVQEIRRCLDEGVEFQGELLNFRKDGTPLMNRLRLTPIHGDDGIITHIIGIQLFTEANIDLGPMPLPFYKEVSTRFADRSLSDPFLYRPAVIGQGHFCREICGIFQLSDEVLAQKILSRLTPRDVASVGSACKRLYQLTKNEDLWRMVCQNAWGSETTRVLETVPGAKRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRLVLFGGEGVNMQPMNDTFVLDLSAANPEWRHVKVSSPPPGRWGHTLSCLNGSWLVVFGGCGRQGLLNDVFILDLDAQQPTWREVSGSAPPLPRSWHSSCTLDGTKLVVSGGCADSGVLLSDTFLLDLTMEKPIWKEIPVSWTPPSRLGHSLTVYGGRKILMFGGLAKSGPLRLRSSDVYTIDLSEEEPKWRYLTGSGMPGAGNPGGKAPPPRLDHVAVSLPGGRVLIFGGSVAGLHSASQLYLLDPTEEKPTWRMLNVPGQQPRFAWGHSTCVVGGTRALVLGGHTGEEWILNELHELSLASKHGLE*

Protein Length: 611

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTATCCGAGGGCAAACGAGAGGAGGAAAGATGGAATGGGACAGTGGTTCCGAGATGAGCATGGAGG_-_ATGAAGATCACATGCAAATATGTGAGGATGAAGGTTTCTTTGATGAATGATGGAGGACCAGTTCCAATTGCTATGAATAACCTGCTTCATTCTACTCCATGTGGGTTTGCTGTAACAGATGCCCTTGAACCGGATCAGCCGATTATTTATGTAAACGCGGTGTTTGAGTATGTTACTGGTTACAAGGCCGAGGAGATTCTCGGAAGGAATTGCCGGTTTCTACAGTACAGAGGCCCATTTGCACAGAGAAGGCATCCCCTGGTAGACTCCATGGTGGTTCAAGAAATCAGAAGGTGTCTTGATGAAGGTGTTGAATTTCAAGGTGAGCTATTGAACTTTAGAAAGGATGGGACTCCCCTGATGAATAGGCTCCGCTTGACTCCAATTCATGGTGATGATGGGATAATCACACACATTATAGGAATTCAGCTGTTCACTGAAGCAAATATTGACTTGGGTCCTATGCCATTACCCTTTTACAAAGAGGTATCTACTAGATTTGCAGATCGGTCATTGTCCGATCCTTTCTTGTACAGGCCAGCTGTAATTGGACAAGGACATTTCTGCCGTGAAATCTGTGGGATTTTCCAGCTGAGTGACGAGGTTTTAGCACAAAAAATTTTGTCACGGTTGACACCCAGAGATGTTGCATCTGTTGGATCAGCTTGCAAGCGTCTTTATCAATTGACAAAAAATGAGGATCTGTGGCGAATGGTTTGCCAAAATGCATGGGGTAGTGAAACAACACGTGTGTTAGAAACAGTTCCAGGTGCTAAAAGGCTAGGATGGGGTCGCCTTGCAAGGGAGCTGACTACACTTGAAGCTGCTGCATGGAGGAAACTTACAGTTGGAGGGGCAGTTGAACCTTCTCGTTGTAACTTTAGTGCATGTGCTGTTGGAAACAGACTTGTTCTATTTGGTGGGGAAGGGGTCAACATGCAGCCTATGAATGACACATTTGTACTGGACTTGAGTGCGGCAAATCCAGAATGGCGGCATGTAAAAGTGAGTTCTCCTCCTCCAGGTCGGTGGGGCCACACCTTATCGTGCTTGAATGGATCTTGGTTGGTGGTTTTTGGTGGGTGCGGCAGGCAGGGATTACTGAACGATGTTTTCATTCTGGATTTGGATGCTCAGCAGCCTACTTGGCGTGAAGTTTCAGGCTCTGCACCCCCTCTTCCACGATCATGGCATAGTTCCTGCACCCTGGATGGCACAAAATTGGTTGTCTCAGGTGGGTGTGCAGATTCTGGGGTGCTTCTCAGTGATACATTTTTACTGGATCTCACAATGGAGAAGCCTATATGGAAAGAGATACCGGTTTCATGGACTCCACCTTCTAGGTTGGGTCACTCTCTTACTGTCTATGGAGGCCGAAAGATTCTCATGTTTGGTGGCCTAGCCAAAAGTGGGCCTTTGAGGCTGAGGTCAAGTGATGTGTATACAATTGATCTCAGTGAAGAAGAGCCTAAATGGAGATACTTAACAGGAAGTGGGATGCCAGGTGCGGGGAATCCTGGGGGAAAAGCACCTCCACCCAGGCTTGATCACGTGGCTGTGAGTTTACCAGGTGGTAGAGTGCTGATCTTTGGAGGATCCGTGGCTGGTTTGCACTCAGCCTCACAATTATATCTTCTGGATCCTACTGAGGAGAAACCTACATGGAGAATGTTGAATGTTCCTGGACAACAACCAAGGTTTGCTTGGGGCCACAGTACCTGTGTAGTTGGAGGGACCAGGGCTTTAGTGCTGGGCGGCCATACTGGAGAAGAATGGATACTCAATGAATTACATGAGTTGTCCTTAGCAAGCAAACATGGGTTAGAGTAG___CAGGCAAACTCACTTTCACCAGATCATTTCCAGAATGGAATGGACAGACAGTCAGAGCAACTGTGATATCTTTTATCATCGATCAGATCATCTATATCAACTGAAAGAAGACAGATTTCAGAGAGTTGCAGAGAGTGTCTTAGTTTAATATTTCATATGCTGCTCACACAGAGGATGTGATTTGGTGGACAGCATATTGTGCTGCTTGATTACGTCCTTTCATGATTAATTAGTAAATTTTACCACCGAAAATCTAAGTTAAAATAAGATAGCCATTTGTGCCTGCGTTGTAGGCAAGTGAGATTTATTCAGCAGTTCGTGATCTAGGTTATCTTAGGGATGATTGTATTTTGTTGTCTGTTATTTTATAGATACTGGGGAACATGTAAGGCTGTATATGTTTGTTTGTTCTGTAGATTATGTCATTGCTAGCAATTGTGTACCATATCTTTCTTTTGCTAGATTGAAATCCTAGATTAGAGTAACTAGCTCGCATGCATGCTTAGAGTACTGATACGAC

Fln Alignment:

sp_v1.1_unigene5005___WRKLTVGGAVEPSRCNFSACAVGNRLVLFGGEGVNMQPMNDTFVLDLSAANPEWRHVK-VSSPPPGRWGHTLSCLNGSWLVVFGGCGRQGLLNDVFILDLDAQQPTWREVSGSAPPLPRSWHSSCTLDGTKLVVSGGCADSGVLLSDTFLLDLTMEKPIWKEIPV--SWTPPSRLGHSLTV--YGGRKILM-FGG
C0PPX6______________WCVLKSYGKAPIARGGQSVTLVGSSLVMFGGEDSMRSLLNDLNILDLETMT--WDAIEAVGTPPSPRSDHTATVHANRYLLIFGGGSHSTCFNDLHVLDLQSMEWSRPKMQGTL-PTPRAGHAGVTIGENWYIVGGGDNKSGV--SETMVLN--MSTLVWSVVTTVQGRVPLASEGLSLVVTSNNGEDILVAFGG

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
1030	80	20			0.995493
1180			71	28	1.0
1323	85		14		0.993533
1553	16		83		0.994512
1557	16		83		0.994512
1618	25		75		0.996473
1741	33		66		0.997452
1823		75		25	0.996473
1909		11		88	0.923564
1926		12		87	0.992554
1927	12		87		0.992554
1929	87		12		0.992554
1930			12	87	0.992554
1934			12	87	0.992554
1936		12		87	0.992554
1937	87		12		0.992554
1978	85		14		0.993533
2098	14		85		0.993533
2146			14	85	0.993533
2213		85		14	0.993533
2215	14		85		0.993533
2216		85	14		0.993533
2222	14	85			0.993533
2226		12		87	0.992554
2232			83	16	0.994512
2235			16	83	0.994512
2236	16	83			0.994512
2237		16		83	0.994512
2245		80	20		0.995493
2246	80			20	0.995493
2247	80		20		0.995493
2250	20	80			0.995493
2251		80	20		0.995493
2252	80	20			0.995493
2255	20			80	0.995493
2259			80	20	0.995493
2260		20		80	0.995493
2262		20	80		0.995493
2263	87		12		0.992554
2265		12		87	0.992554
2316	20		60		0.99255
2392	50	50			1.0
2404	50	50			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain