SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4687

Length: 1583 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4687

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA-binding protein PcMYB1, putative n=4 Tax=Arabidopsis RepID=Q8LA70_ARATH	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	single myb histone	-	-	65%

Source	GOs	Term	Type	Identity
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	65%
Blast2go	response to gibberellin stimulus	GO:0009739	Biological Process	65%
Blast2go	response to salt stress	GO:0009651	Biological Process	65%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	65%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	65%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	65%
Blast2go	response to ethylene stimulus	GO:0009723	Biological Process	65%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	65%
Blast2go	double-stranded telomeric DNA binding	GO:0003691	Molecular Function	65%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	65%

Source	InterPros	Term	Type	Identity
Blast2go	SANT/Myb domain	IPR001005	-	65%
Blast2go	Histone H1/H5	IPR005818	-	65%
Blast2go	Homeodomain-like	IPR009057	-	65%
Blast2go	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	65%
Blast2go	Homeodomain-related	IPR012287	-	65%
Blast2go	Myb, DNA-binding	IPR014778	-	65%
Blast2go	Myb domain, DNA-binding	IPR017930	-	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR63

Fln msg:

Fln protein: MGAPKQKWTHEEEAALRAGVEKYGPGKWRAILRDPILSSCLSSRSNVDLKDKWRNMSVTANGWGSREKARLALKRSKYIAKQSGRQLALSALSNGNMDVVVTKPLSTVNPYFPSSNTKRSISRLDKLILDAVFTLKEPNGSNKSAIATYIEENQYPPPNFRRMLSSKLKSLVICGKLVKIRQNYMINGSFRPDDEKVPKNEKVEKHVTTLSKNSSKKVVGEVDIAVKSEVDAEVSKMRRMNAEEAAKAAGLLLLKQRQLLQQQNKQHVKQRLQRLRLKLQRLLQKQR*

Protein Length: 289

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAATGAGTTGAAAACACGAAAATTGCAGTCATAGAAATGGAGTACGAGAGAACAGAAAATAGCAAAGAAAGCAGCACGAATTGCATGTGTATATCCATCTGCATCTTTCTATCCATCAGTTACAGAGTCTCTTAAAACCCCTTTTAGGGGCACATTACGGGATGGTATGCAAGTAGAAGTGGGCGTTTAGGTTTTGGCAGCAGGAATTCTGTCGTGGCAGTGAAAATAATTTCACGGCTTCAGTAG_-_ATGGGGGCTCCAAAGCAGAAATGGACACATGAAGAGGAGGCTGCTCTTAGGGCTGGGGTGGAGAAATACGGACCTGGTAAATGGCGTGCTATTCTGAGAGATCCCATATTAAGCTCGTGCTTGTCATCACGGTCTAATGTTGATCTGAAGGATAAATGGCGGAATATGAGTGTTACTGCAAATGGTTGGGGTTCAAGGGAAAAGGCAAGACTGGCACTCAAAAGAAGCAAATACATTGCAAAGCAATCTGGCAGGCAACTTGCACTTAGTGCATTAAGCAATGGAAATATGGATGTTGTGGTTACTAAGCCCTTGTCAACTGTCAATCCATATTTTCCAAGCTCAAATACCAAAAGATCTATTTCAAGGTTAGATAAGCTGATTTTGGATGCAGTCTTCACATTGAAGGAGCCAAATGGATCAAACAAATCTGCAATTGCAACATATATTGAGGAGAATCAATATCCGCCTCCAAACTTCAGGAGAATGTTGTCATCAAAGTTGAAATCACTAGTAATATGTGGGAAACTGGTCAAGATAAGACAAAACTACATGATAAATGGTAGTTTTCGTCCAGATGATGAGAAAGTCCCCAAAAATGAGAAAGTGGAAAAGCATGTCACAACCCTTAGTAAGAACTCTTCAAAAAAGGTGGTAGGGGAAGTTGATATCGCAGTTAAATCTGAGGTTGATGCAGAAGTTTCTAAGATGAGAAGGATGAATGCCGAAGAGGCTGCTAAAGCAGCAGGGTTGCTGTTGCTGAAGCAGAGGCAGCTATTGCAGCAGCAGAACAAGCAGCACGTGAAGCAGCGGCTGCAGAGGTTGAGGCTGAAGCTGCAGAGGCTTTTGCAGAAGCAGCGATGA___TGGCACTGGTGAACTCTAGAAGTTGTTACTAGTCATCTTCAAATGAGGGATTTTGTTGTGCCAATTTTATGGTGCTGGTGAACATTTGCTATTGGATAGCTCTTGATAGCACATGTTAGACAGTAGTTCCATTATCTTATTGTTTTCTTTTGGGCAGTGGTACTTCTGAACAGATGTGAGGTCCTGTTGTAGAATAAATTTTCATTTGATCTTGTAATTATGTTCATTAGCTTTTCTCAGCGGGATGTGTATTATAAAAATTTCCTTTTTCCTGCATGGTAAACATTCTCTTAGGTGGTTAAGGATGGAAGCACTTCTTATTGACTTCCCTGTACAGTTTATACACCATGAATATTTCGTATTTTCAAGCAACCGATGAGTTTAGCTTGTTTTCAGTTGTACCTTTTTCATATCATTCAATGAAACTCACTAGCTGGGACTTAAAAGTT

Fln Alignment:

sp_v1.1_unigene4687___MGAPKQKWTHEEEAALRAGVEKYGPGKWRAILRDPILSSCLSSRSNVDLKDKWRNMSVTANGWGSREKARLALKRSKYIAKQSGRQLALSALSNGNMDVVV-TKPLSTVNPYFPSSNTKRSISRLDKLILDAVFTLKEPNGSNKSAIATYIEENQYPPPNFRRMLSSKLKSLVICGKLVKIRQNYMINGSFRPDDEKVPKNEKVEKHVTTLSKNSSKKVVGEVDIAVKSEVDAEVSKMRRMNAEEAAKAA
B8LR63______________MGAPKQKWTHEEEAALRTGVEKYGPGKWRAILRDPSLSLCLASRSNVDLKDKWRNMSVTANGWGSREKARLALKRSKYIAKQSGRQLALSALSNGNMDVVVVTKPLTTVNPYLPSSNTKRSISRLDKLILDAVSTLKEPNGSNKSAIATYIEENQYPPPNFRRMLSSKLKSLVICGKLVKIRQNYMISGSFRPDDDKAPRSEKEEKHVRTLSKNSSKKVVEEVGITVKSEVDAEVSKMRTMNAEEAAKAA

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
809	11		88		0.923564
810	88		11		0.923564
851	85		14		0.993533
852			14	85	0.993533
975	33			66	0.997452
977			33	66	0.997452
978		66	33		0.997452
979			33	66	0.997452
1095		66		33	0.997452
1160		11		88	0.923564
1165	88		11		0.923564
1467		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain