SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4609

Length: 1197 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene4609 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	histone acetyltransferase type B catalytic subunit, putative (EC:2.3.1.48); K11303 histone acetyltransferase 1 [EC:2.3.1.48]	-	-	40%
FL-Next	sp=Probable acetyltransferase type B catalytic subunit; Oryza sativa subsp. japonica (Rice).	-	-	41%
Blast2go	histone acetyltransferase hat b	-	-	57%

Source	ECs	Term	Type	e value	Identity
AutoFact	Histone acetyltransferase.	EC:2.3.1.48	-	0.0	40%

Source	GOs	Term	Type	e value	Identity
Blast2go	H4 histone acetyltransferase activity	GO:0010485	Molecular Function	0.0	57%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	57%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Acyl-CoA N-acyltransferase	IPR016181	-	0.0	57%
Blast2go	Histone acetyl transferase HAT1 N-terminal	IPR019467	-	0.0	57%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q6ES10

Fln msg: Distance to subject end: 124 aas, your sequence is shorter than subject: 367 - 466

Fln protein: MAPVKRIEPEKTKANEGKPKRRKVAFAIDTGIEANDCISLHLVSTPEEMRDAEGVEYQSLSFNPEYMQHFVGEHGKIYGYKGLKIDVWLNALSFHAYVDIQYESKVEEGKSEKEATDLTDLMKRIFGRGLVEDRNAFIQSFSSNSQSIESMIHNEGERIATREILTDKGLSAQGDSERLGVSSEIFRLELSDPQIREWHARLEPLVLLFVEGSQPIEQDDPKWEMYIRVQRESLSGGSAVCRLLGFCTVYRFYHYPDTTRLRISQILVFPPYQGKGHGLLLLEAVNKTAVSRDSYDVTVEEPSESLQELRDCMDTIRLLSFEPVMPAVKSAVQKLKEANPSDKSAADHCLEGNVNNETVTTSSTKPK

Protein Length: 368

Fln nts: GTGGTATCAACGCAGAGTACATGGGCATTTCCATTTATATCTCAATACCAGGTCTCAGAGATTTTATCGGCCGTCAAATCTCTGATAAGAAATA_-_ATGGCTCCCGTCAAGAGGATCGAACCAGAGAAAACGAAGGCTAACGAAGGCAAGCCGAAGCGCCGGAAAGTAGCGTTCGCCATAGACACAGGAATTGAAGCAAATGACTGCATATCACTTCATCTTGTGAGCACCCCAGAGGAAATGCGAGATGCAGAGGGAGTGGAGTATCAAAGCTTATCATTCAACCCAGAATATATGCAACATTTTGTTGGGGAACATGGGAAGATCTATGGCTACAAAGGCCTGAAAATTGATGTGTGGCTGAATGCCCTCTCATTTCATGCCTATGTGGATATCCAGTATGAGAGCAAAGTTGAGGAAGGAAAGAGCGAGAAAGAAGCAACAGACTTGACAGATCTTATGAAGAGAATATTTGGACGTGGCTTGGTGGAAGATCGTAATGCCTTTATCCAGAGTTTTTCAAGTAACAGTCAATCTATCGAAAGTATGATCCACAATGAAGGTGAGCGTATAGCAACACGTGAGATTTTGACTGATAAGGGTCTATCTGCGCAAGGAGATTCAGAGAGATTGGGAGTCTCGTCCGAGATATTCCGCCTTGAATTGAGCGATCCACAGATACGAGAATGGCATGCACGCTTGGAACCGCTTGTGCTTCTTTTCGTTGAAGGAAGCCAACCTATAGAGCAAGATGACCCAAAATGGGAAATGTATATCAGGGTCCAGAGGGAGTCATTGAGTGGAGGCAGTGCGGTGTGTAGATTATTGGGATTCTGTACTGTTTACCGTTTCTATCATTATCCAGACACCACCCGTCTAAGAATTAGCCAGATACTAGTTTTCCCTCCTTATCAAGGTAAAGGGCACGGCTTACTTCTTTTAGAGGCTGTAAATAAAACTGCAGTTTCGAGGGATTCTTACGATGTAACAGTAGAAGAACCATCCGAGTCCCTTCAGGAATTACGCGATTGCATGGATACAATACGCCTCCTTTCTTTTGAACCTGTAATGCCTGCAGTTAAGTCAGCAGTGCAGAAGTTGAAGGAAGCAAACCCCTCAGACAAAAGTGCAGCTGATCACTGTTTAGAAGGAAATGTAAACAATGAGACTGTGACTACCTCCAGCACAAAACCCAAAAA

Fln Alignment:

sp_v1.1_unigene4609___IEPEKTKANEGKPKRRKVAFA-IDTGIEANDCISLHLVSTPEEMRDAEGVEYQSLSFNPEYMQHFVGEHGKIYGYKGLKIDVWLNALSFHAYVDIQYXXXXXXXXXXXEATDLTDLMKRIFGRGLVEDRNAXXXXXXXXXXXXXSMIHNEGERIATREILTDKGLSAQGDSERLGVSSEIFRLELSDPQIREWHARLEPLVLLFVEGSQPIEQDDPKWEMYIRVQRESLSGGSAVCRLLGFCTVYRFYHYPDTTRLRISQILVFPPYQGKGHGLLLLEAVNKTAVSRDSYDVTVEEPSESLQELRDCMDTIRLLSFEPVMPAVKSAVQKLKEANPSDKSAA
Q6ES10______________LKQKGTDAAADPKKRRRVGFSGIDAGVEANECMKVFIARNPDEAGSAN-----STSLQPFDLNHFFGEDGKIYGYKNLKINVWISAISFHAYADISFEETSDGGKGI---TDLKPVLQNIFGENLVEKDE------------FLKTFSKECEYLSN--VVTDGNVIKHDASIDEDSAVEIVRVELQGAAAF-LYCRLVPLILLLVEGSTPIDITEHGWEMLLVVKKSAQASSSSNFLVLGFAAVHHFYHYPESTRLRISQILVLPPYQGEGHGLRLLETINSISESENIYDVTIEDPSDYLQYIRSSIDCLRLLTFDPIKPALCSMVSSLKDTNLSKRTSS

SNPs (tot: 59)

Position	A %	C %	G %	T %	Probability
167		20		80	0.995493
687		82	5	11	0.999919
693	82	17			1.0
694	82		11		0.999919
695	88			11	0.999952
699	88			11	0.999952
702	88		11		0.999952
828			90	9	0.999842
896	84			15	0.999986
897	84		15		0.999986
898	15		7	76	0.999983
901		7	15	76	0.999983
902	23		76		1.0
905		7	15	76	0.999983
906	75	16	8		0.99999
907		20		80	0.999996
909	20			80	0.999996
910			20	80	0.999996
911		80	20		0.999996
913	20		80		0.999996
914		20	80		0.999996
916	20			80	0.999996
917		20		80	0.999996
928		87		12	0.992554
929		12		87	0.992554
930	12			87	0.992554
931	12			87	0.992554
933	87		12		0.992554
935	12	75			0.975346
937	12			87	0.992554
939		87	12		0.992554
941	12	87			0.992554
942			12	87	0.992554
1016	28			71	1.0
1020			28	71	1.0
1022		28		71	1.0
1023	28		71		1.0
1026		28	71		1.0
1031		71	28		1.0
1035	28			71	1.0
1036		28		71	1.0
1037			28	71	1.0
1038	28	71			1.0
1068		20		80	0.995493
1134	70	10	10	10	0.922578
1135	88	11			0.923564
1136	88		11		0.923564
1138		87	12		0.992554
1139	12			87	0.992554
1145	87	12			0.992554
1147	12	87			0.992554
1148	12			87	0.992554
1152	87	12			0.992554
1153	12			87	0.992554
1154		12		87	0.992554
1161	33			66	1.0
1162	66	16			0.988813
1163	66	16			0.988813
1164	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain