SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4414

Length: 533 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene4414
CTGTCCAAAGAAAATCAGTTGCTGAGTACATGAACCAGTGTGATGATACTCTGAAGAAGATCACGACACATAAATTTTCCTGGGTATTCAATGAGCCTATTCATCCAGTTAAATTAAACATCCCTGATTATTTTTAGATTATCACTCAACCCATAGATTTGGGCACTATACAAAGTAAGTTGGATAGGAATCTCTATTCCACCCGAATGGAATTTGCTGAAAATGTAAGATTGAGTTTTTCCAATGCAATAAAATATAATCCCCCTGGTAATGATGTTCATTATATGGCAGTTAATATGAGTCGATTCTTTGAGGGAAAATGGAAAATTATTGAGCAGAAGTTGGTTGGAGAAGATGTTTATAGAAAATTAACTCAGGTTGTTCAGCTTATTCTAACCAAGAAGAAATAGTGTAGTAACAATTTTCCAGAAACAAGAAATAAATCAAAGGTACAAACTGCAAATTTTGCTCCTCTCAGATGTACCAAGTCAGCAGAAACCGAAGGTTGAAAAATGCAAGCACCTGATGTTATT

Ace file of the UniGene sp_v1.1_unigene4414 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Bromodomain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RAK3_RICCO	-	-	6.0e-31	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%
Blast2go	global transcription factor group	-	-	1.09113e-30	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	1.09113e-30	73%
Blast2go	protein binding	GO:0005515	Molecular Function	1.09113e-30	73%
Blast2go	transcription repressor activity	GO:0016564	Molecular Function	1.09113e-30	73%
Blast2go	nucleus	GO:0005634	Cellular Component	1.09113e-30	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ABJ0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 97 aas, your sequence is shorter than subject: 136 - 377

Fln protein: VQRKSVAEYMNQCDDTLKKITTHKFSWVFNEPIHPVKLNIPDYF*IITQPIDLGTIQSKLDRNLYSTRMEFAENVRLSFSNAIKYNPPGNDVHYMAVNMSRFFEGKWKIIEQKLVGEDVYRKLTQVVQLILTKKK*

Protein Length: 137

Fln nts: CTGTCCAAAGAAAATCAGTTGCTGAGTACATGAACCAGTGTGATGATACTCTGAAGAAGATCACGACACATAAATTTTCCTGGGTATTCAATGAGCCTATTCATCCAGTTAAATTAAACATCCCTGATTATTTTTAGATTATCACTCAACCCATAGATTTGGGCACTATACAAAGTAAGTTGGATAGGAATCTCTATTCCACCCGAATGGAATTTGCTGAAAATGTAAGATTGAGTTTTTCCAATGCAATAAAATATAATCCCCCTGGTAATGATGTTCATTATATGGCAGTTAATATGAGTCGATTCTTTGAGGGAAAATGGAAAATTATTGAGCAGAAGTTGGTTGGAGAAGATGTTTATAGAAAATTAACTCAGGTTGTTCAGCTTATTCTAACCAAGAAGAAATAGTGTAGTAACAATTTTCCAGAAACAAGAAATAAATCAAAGGTACAAACTGCAAATTTTGCTCCTCTCAGATGTACCAAGTCAGCAGAAACCGAAGGTTGAAAAATGCAAGCACCTGATGTTATT

Fln Alignment:

sp_v1.1_unigene4414___KSVAEYMNQCDDTLKKITTHKFSWVFNEPIHPVKLNIPDYF*IITQPIDLGTIQSKL---DRNLYSTRMEFAENVRLSFSNAIKYNPPGNDVHYMAVNMSRFFEGKWKIIEQKLVGEDVYRK
D5ABJ0______________KRMAELMRQFSTILRQITQHRWAWPFMTPVDVKGLGLHDYHDVIKKPMDFGTIRRKMDAKDATGYKNVCDICEDVRLVFKNAVTYNDDQSDVHVMAKTLSQKFEEKWKTLWPKVNEEEARRK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain