SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4230

Length: 455 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene4230
ATGGGACCAGTTCTTTTCATCAATTTCTTGTTATTATCTGGGTAGGGAGGGATTTATTCTCTATCAATTTTCACAGTCCTGAATCTCGAAACCAGTGGTGGCAGCATTCAGCAGATTTCAGAAATGGAGGGCTTGAATTTTACGTATGCGCAGGACAAGGGTGACACACAGCTTCCCCCAGGGTTCAGGTTTCATCCCACTGACGAAGAGTTGATCACTCACTATCTTGTTAGAAAGGTCCTTGACAGCAACTTCTCAGGCCGAGCCATTGCTGAGGTCGACCTCAACAAGTGCGAGCCCTGGGATCTTCCAGAGAAAGCGAAGATGGGTGAGAAGGAATGGTACTTTTTCAGCCTCAGAGATCGCAAATATCCAACAGGGCTGCGCACCAACAGAGCCACAGAAGCGGGCTACTGGAAGGCCACTGGCAAGGACCGAGAGATTTCAGTGCACGA

Ace file of the UniGene sp_v1.1_unigene4230

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NAM [Petunia x hybrida] emb\|CAA63102.2\| NAM [Petunia x hybrida]	-	-	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	64%
Blast2go	nac domain ipr003441	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	secondary shoot formation	GO:0010223	Biological Process	93%
Blast2go	formation of organ boundary	GO:0010160	Biological Process	93%
Blast2go	primary shoot apical meristem specification	GO:0010072	Biological Process	93%
Blast2go	regulation of timing of organ formation	GO:0048504	Biological Process	93%
Blast2go	leaf development	GO:0048366	Biological Process	93%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	93%

Source	InterPros	Term	Type	e value	Identity
Blast2go	No apical meristem (NAM) protein	IPR003441	-	0.0	93%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVZ2

Fln msg: Distance to subject end: 72 aas, your sequence is shorter than subject: 110 - 186

Fln protein: MEGLNFTYAQDKGDTQLPPGFRFHPTDEELITHYLVRKVLDSNFSGRAIAEVDLNKCEPWDLPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREISVH

Protein Length: 111

Fln nts: ATGGGACCAGTTCTTTTCATCAATTTCTTGTTATTATCTGGGTAGGGAGGGATTTATTCTCTATCAATTTTCACAGTCCTGAATCTCGAAACCAGTGGTGGCAGCATTCAGCAGATTTCAGAA_-_ATGGAGGGCTTGAATTTTACGTATGCGCAGGACAAGGGTGACACACAGCTTCCCCCAGGGTTCAGGTTTCATCCCACTGACGAAGAGTTGATCACTCACTATCTTGTTAGAAAGGTCCTTGACAGCAACTTCTCAGGCCGAGCCATTGCTGAGGTCGACCTCAACAAGTGCGAGCCCTGGGATCTTCCAGAGAAAGCGAAGATGGGTGAGAAGGAATGGTACTTTTTCAGCCTCAGAGATCGCAAATATCCAACAGGGCTGCGCACCAACAGAGCCACAGAAGCGGGCTACTGGAAGGCCACTGGCAAGGACCGAGAGATTTCAGTGCACGA

Fln Alignment:

sp_v1.1_unigene4230___LPPGFRFHPTDEELITHYLVRKVLDSNFSGRAIAEVDLNKCEPWDLPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIS
A9NVZ2______________LPPGFRFYPTDEELMVHYLCKRVASQPFPIPIIAEIDLYKFDPWQLPEKALFGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGTDKPVT

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain