SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene4016

Length: 1192 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene4016

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein-tyrosine kinase, putative (EC:2.7.11.25)	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein kinase	-	-	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	kinase activity	GO:0016301	Molecular Function	0.0	75%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	75%
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	75%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	75%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	75%
Blast2go	Protein kinase-like domain	IPR011009	-	75%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	75%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNA8

Fln msg: your sequence is shorter than subject: 261 - 552

Fln protein: FNREVGILSHLHHRNIVELVAACRRPPVFCVITEYLSGGSLRSFLHKREPGSVSLKEFVSIALDIARGMEYLHSQGVIHRDLKSENLLFTADMCLKVVDFGIACEEINCDYLNEDRGTYRWMAPEVINHKPHNRKADVYSFGIVLWEIITGRVPYEDITPVQAAFAVVHKNARPTFPEHCPLAIRKLIEKCWVQNPEKRPEFWEIVSILEQFEASLLFDGTLNMRQNLCSNEWRHRLPQWFQWLGIRNPGNATISPSPPK*

Protein Length: 262

Fln nts: GTTCAATAGAGAAGTCGGTATCTTGTCTCATCTTCATCACCGAAATATTGTCGAGTTAGTGGCAGCATGTAGAAGGCCACCAGTATTCTGCGTAATTACAGAATACTTATCAGGAGGTTCTCTGAGATCATTTTTGCATAAGAGAGAACCAGGATCTGTGTCTCTGAAAGAGTTTGTATCAATAGCTCTAGATATTGCTCGAGGTATGGAATATTTGCACTCACAAGGGGTGATCCACCGTGACTTAAAGTCAGAGAATCTACTATTCACGGCAGATATGTGCTTGAAAGTTGTGGACTTTGGTATTGCTTGTGAAGAAATAAACTGTGATTATCTGAATGAAGATCGAGGCACATATCGCTGGATGGCACCCGAGGTAATCAACCACAAGCCACACAACAGGAAGGCTGATGTCTACAGCTTTGGCATTGTATTGTGGGAAATTATTACGGGCAGAGTCCCATACGAAGATATCACACCTGTTCAAGCTGCTTTTGCTGTAGTACATAAGAATGCTAGGCCCACATTTCCAGAACATTGTCCGCTTGCAATCCGGAAGCTAATTGAGAAATGTTGGGTTCAAAATCCAGAAAAGAGGCCAGAATTCTGGGAGATCGTCAGTATTCTAGAGCAATTTGAAGCTTCTCTTCTTTTTGATGGCACATTGAATATGCGTCAAAATCTCTGTTCTAATGAATGGAGGCACCGGCTACCACAGTGGTTTCAGTGGCTTGGCATACGAAATCCTGGAAATGCAACTATATCACCATCGCCACCTAAATGA___GACTAACTCTCATTCATCCCACTGTTTCCTCTTGATGATGACGAAGATCCTCCCAAGACAATTATTGCTGTTATATTATACTAGCAAATAACATATCCCCTTGTATATTCTTATATTTCTACATGTAACGTCTGACTAACATTTCCTCTGGCCAGTTTGTCCTCTGATCCTGGAAGAATGATTCGATGAAAGGAGCTGCTGCTCCTGTTTTGTACCATGTCCAAACCTTTCTTCCATTTTTATCTATGCATCATTATTCTTCTGTTAATTAATAACATCACTCATTCAAAAGTCGTGGTCTGGTTTGCTTATATACTGCATTAAAGCGATGCTAATAATCTCTATGTAGCTGTATCAATCCTCCAATGCCTGATTGGATAACTAAGTAATGCATTCCCAATCAGAAGC

Fln Alignment:

sp_v1.1_unigene4016___FNREVGILSHLHHRNIVELVAACRRPPVFCVITEYLSGGSLRSFLHKREPGSVSLKEFVSIALDIARGMEYLHSQGVIHRDLKSENLLFTADMCLKVVDFGIACEEINCDYLNEDRGTYRWMAPEVINHKPHNRKADVYSFGIVLWEIITGRVPYEDITPVQAAFAVVHKNARPTFPEHCPLAIRKLIEKCWVQNPEKRPEFWEIVSILEQFEASLLFDGTLNMRQNLCSNEWRHRLPQWFQWLGIRNPGNATISPSPPK
B8LNA8______________FDREVAILSHLHHRNIVQLVAACRRPPVFCVITEYLSGGSLRSFLHKREPGSVSPKEFVSIALDVARGMEYLHSQGVIHRDLKSENLLFTGDMCLKVVDFGIACEEINCDYLNEDRGTYRWMAPEVINHKPHNRKADVYSFGIVLWEIITGRVPYEDITPVQAAFAVVHKNARPTFPEHCLFAIQKLIEKCWVQNPEKRPEFWEIVSILEQFEASLLFDGTLNMRQNVCSNEWKHRLPIWFQWLGIRNPGNATISPSPPK

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
540	80		20		0.995493
542		20		80	0.995493
545		80	20		0.995493
546	20	80			0.995493
547		20	80		0.995493
553	80			20	0.995493
554	80		20		0.995493
557	20	80			0.995493
558		20	80		0.995493
559			80	20	0.995493
560	80	20			0.995493
626	83		16		0.994512
627	16			83	0.994512
628		16		83	0.994512
631	83			16	0.994512
636	83			16	0.994512
637	83		16		0.994512
639		16		83	0.994512
640	16			83	0.994512
641		16	83		0.994512
642	83			16	0.994512
643	83	16			0.994512
644	16		83		0.994512
881	75		25		0.996473
884	75		25		0.996473
886		75	25		0.996473
887	25	50		25	0.995533
893			25	75	0.996473
894	75	25			0.996473
897			25	75	0.996473
900	25			75	0.996473
901		25		75	0.996473
902	75			25	0.996473
903		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain