SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3979

Length: 1498 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene3979 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CDK-activating kinase n=1 Tax=Medicago sativa subsp. x varia RepID=Q947K6_MEDVA	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	protein	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	cellular process	GO:0009987	Biological Process	81%
Blast2go	kinase activity	GO:0016301	Molecular Function	81%
Blast2go	nucleus	GO:0005634	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	81%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	81%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	81%
Blast2go	Protein kinase-like domain	IPR011009	-	81%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	81%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	81%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	81%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AE54

Fln msg: Distance to subject end: 59 aas, your sequence is shorter than subject: 402 - 480

Fln protein: MDLNQYPADSNPELPEGTDNVDNSDDNKGSRVPSPHPPLKPLDPSERYRKGITLGQGTYGIVYKAFDTVTNKTVAVKKIHLGKAKEGVNVTALREIKLLKELSHPNIIQLIDAYPHKQNLHIVFEFMETDLEAVIKDRNLVFSPADIKSYMQMTLKGLAVCHKKWVLHRDMKPNNLLIAADGQLKLGDFGLARLFGSPDRKFTHQVFAVWYRAPELLFGAKQYGPAVDIWATGCIFAELLLRKPFLQGVSDLDQIGKIFAAFGTPRQSQWPDVASLPDFVEFQFVPAPPLRSLFPMASEDALDLLSKMFTLDPKNRITAQQALEHRYFSCMPAPTRPDLLPKPSKVDPSRPTKHASPDGPVVLSPSKARRVMLFPNNLAGILSKQASQSTTGGTPIEFDMPT

Protein Length: 403

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCTCTTTTCGTTCTCCTCTTGGTGTCCTCCGGCACAGAAAGCCAAGATGTTGATCGCCTCCCACGCTCGCACTTGACCGTTCTCACGAGAAATCTCATGTCCATTCCTTCCGTGCGAGCCGATAGAGGACCCCAAGAGAAGCACAATATTTTTGCTATAACTAATAATGCCATTAACATCCGCTGTTGGGACGCCCGGAAGTAAATGATCCATCGTTGCGCGAAGAGCAAAGTCAGTTAAAGCGCTAACAACCATATCAGTAACG_-_ATGGACTTGAACCAGTACCCTGCAGACTCGAACCCGGAACTACCCGAGGGTACAGACAACGTAGATAATTCTGATGATAACAAAGGCTCCCGTGTTCCTTCTCCCCATCCTCCTCTGAAGCCACTCGATCCCTCTGAACGGTACCGCAAAGGTATCACTCTTGGGCAAGGTACCTATGGGATCGTCTACAAGGCCTTCGATACTGTGACAAACAAAACTGTGGCAGTAAAGAAAATCCATCTGGGCAAAGCCAAAGAAGGCGTTAATGTAACTGCTTTAAGAGAAATCAAATTATTGAAGGAGCTTTCGCATCCAAATATAATTCAGCTAATAGATGCATATCCACACAAACAAAATTTACATATTGTCTTTGAATTCATGGAGACTGATCTTGAGGCTGTTATAAAAGACAGAAACTTAGTTTTCTCCCCAGCTGATATAAAATCCTATATGCAAATGACGTTGAAGGGGCTTGCTGTTTGCCATAAAAAATGGGTTTTGCACAGGGATATGAAACCAAATAACTTGTTGATTGCTGCTGACGGCCAACTGAAGTTAGGAGATTTTGGCCTGGCTCGCTTGTTTGGTAGTCCAGACCGCAAATTTACTCATCAGGTTTTTGCAGTTTGGTACAGGGCACCGGAGTTACTGTTTGGAGCTAAACAGTATGGTCCAGCTGTAGATATATGGGCAACAGGTTGTATTTTTGCAGAACTTCTGCTCCGAAAACCGTTTCTTCAGGGTGTGAGTGATCTCGACCAGATAGGGAAGATTTTTGCAGCCTTTGGAACTCCTAGACAGTCACAGTGGCCAGATGTGGCCTCTCTTCCAGATTTTGTTGAATTCCAGTTTGTTCCTGCACCACCGCTACGTTCTTTATTTCCCATGGCTAGTGAAGATGCCTTGGATCTTCTGTCAAAGATGTTTACGTTGGATCCAAAAAATAGGATTACTGCACAGCAAGCATTGGAACACAGATATTTTTCTTGTATGCCTGCTCCCACGAGGCCAGATTTGCTTCCCAAACCCTCTAAGGTGGACCCATCAAGGCCCACAAAGCATGCATCTCCAGATGGTCCTGTAGTGCTGTCTCCTTCTAAGGCAAGGCGAGTAATGCTCTTTCCAAATAATTTGGCTGGAATTCTATCAAAGCAAGCTTCCCAATCTACAACTGGAGGGACACCAATTGAATTTGACATGCCGACAC

Fln Alignment:

sp_v1.1_unigene3979___MDLNQYPADSNPELPEGTDNVDNSDDNKGSRVXXXXXXXXXXXXSERYRKGITLGQGTYGIVYKAFDTVTNKTVAVKKIHLGKAKEGVNVTALREIKLLKELSHPNIIQLIDAYPHKQNLHIVFEFMETDLEAVIKDRNLVFSPADIKSYMQMTLKGLAVCHKKWVLHRDMKPNNLLIAADGQLKLGDFGLARLFGSPDRKFTHQVFAVWYRAPELLFGAKQYGPAVDIWATGCIFAELLLRKPFLQGVSDLDQIGKIFAAFGTPRQSQWPDVASLPDFVEFQFVPAPPLRSLFPMASEDALDLLSKMFTLDPKNRITAQQALEHRYFSCMPAPTRPDLLPKPSKVD---PSRPTKHASPDGPVVLSPSKARRVMLFPNNLAGILSKQASQSTTGGTPIEFDMPT
D5AE54______________VDLNQHPADSNPELSEGTDNVNKNDNSKGSRAPPPHPPPKQLDPSERYRKGITLGQGTYGTVYKAFDIVTNKTVAVKKIHLGNAKEGVNVTALREIKLLKELSHPNIIQLIDAYPHKQNLHIVFEFMESDLETVIKDRNIVLSPADIKSYMQMTLKGLAVCHKKWILHRDMKPNNLLIASDGQLKLGDFGLARLFGSPNRRFTHQVFALWYRAPELLFGSKNYGPVVDIWAAGCIFAELLLRRPFLQGTGDLDQIGKVFAAFGTPRQSQWPEVGTLPDFVEFQFVPAPPLRSLFPMASEDALDLLSKMFTLDPKNRISAQQALEHRYFSSVPAPTRPDLLPKPSRVDSANPSRPPQLASPGGPVVLSPSKARRVMLFPNNLAGILSKQVSQSASGGTPIEFDMPT

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
963		87		12	0.992554
969		11		88	0.923564
1069			70	30	1.0
1079	90		10		0.90298
1235	91		8		0.999807
1237		91	8		0.999807
1244	8			91	0.999807
1249	8			91	0.999807
1250	8			91	0.999807
1251		91	8		0.999807
1254	8		91		0.999807
1256	91		8		0.999807
1325			5	82	0.999919
1327	11	5		82	0.999919
1330	11	5		82	0.999919
1332	5	82		11	0.999919
1333	5		11	82	0.999919
1334	11		5	82	0.999919
1336	11			88	0.999952
1337		88	11		0.999952
1338	5	11		82	0.999919
1339		17		82	1.0
1340	11		88		0.999952
1341	17		82		1.0
1347	10			89	0.999919
1349			10	89	0.999919
1475		12		87	0.999964
1476		12	87		0.999964
1477	87	12			0.999964
1478	12		87		0.999964

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain