SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3959

Length: 653 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene3959 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to HDA6 (HISTONE DEACETYLASE 6); histone deacetylase n=1 Tax=Vitis vinifera RepID=UPI0001985221	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	34%
Blast2go	histone deacetylase	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	posttranscriptional gene silencing	GO:0016441	Biological Process	94%
Blast2go	histone deacetylation	GO:0016575	Biological Process	94%
Blast2go	protein binding	GO:0005515	Molecular Function	94%
Blast2go	nucleus	GO:0005634	Cellular Component	94%

Source	InterPros	Term	Type	Identity
Blast2go	Histone deacetylase superfamily	IPR000286	-	94%
Blast2go	Histone deacetylase	IPR003084	-	94%
Blast2go	Histone deacetylase domain	IPR023801	-	94%

Full-Lengther Next Prediction

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
525	14		85		0.993533
630			57	42	1.0
631	57		42		1.0
633	57		42		1.0
634	57			42	1.0
636	42	57			1.0
638	42	57			1.0
639	57		42		1.0
640		42		57	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
45	57	ACC ACC ACC ACC A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain