SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3726

Length: 1478 nt

Origin of reads: Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene3726 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NO APICAL MERISTEM n=1 Tax=Aquilegia coerulea RepID=B8XRZ8_AQUCA	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	53%
Blast2go	nac domain-containing protein 21	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	0.0	70%

Source	InterPros	Term	Type	e value	Identity
Blast2go	No apical meristem (NAM) protein	IPR003441	-	0.0	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NS66

Fln msg: your sequence is longer than subject: 448 - 324

Fln protein: MESATVNSKQQQQMNKLDDEHLPPGFRFHPMDEELVTYYLTQKVLDSSFSCRAIAEVDLNKCEPWDLPDKAKMGEKEWYFFSLRDRKYPTGTRTNRATEAGYWKATGKDREIYRGKTNTLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKFAYYDLPKTAKDEWVVTRIFQKSSGAKKGPLGLGRSSSYPDIDSPNLPPLLESPYIPTSVGGAISFESESAGSDQQHVTCFSTPGYPNNNQGFGLPPNQVQQNVGSISSGMPDFTFLQDILMGMNANSNPTEIPPQMSNRASQLPPYSIGPNSNLPTFANLLYPGGMPQNSYNNIFKTHADIANDRFKQCKMEPPSPLFDASRTVKNSTVQQPGSSHWINPSSGYQHGNQDNLEPKYRVPHQQQQMQNQNMVSLSQETGLSTEINTDMSSVVSSQLNQAYQEETPDMDSLWNSFS*

Protein Length: 449

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGCCCGCTCTCTCAATTCTCTGAAATTCTTCTTCTTGTTGCACTGCCCCTCGTGTGTGTC_-_ATGGAGTCAGCGACTGTGAACAGCAAGCAGCAGCAGCAGATGAATAAGCTTGATGACGAGCATCTGCCCCCAGGTTTCAGGTTCCACCCCATGGATGAAGAATTGGTGACATATTACCTTACCCAGAAGGTTCTTGATAGCAGTTTCTCCTGCAGAGCCATTGCTGAGGTTGATTTGAATAAGTGCGAGCCCTGGGACTTACCAGACAAGGCTAAAATGGGAGAGAAAGAATGGTATTTCTTCAGTCTGCGAGACCGAAAGTATCCAACTGGTACACGCACAAACCGAGCCACAGAGGCTGGATACTGGAAAGCAACTGGGAAAGACAGGGAAATATACCGAGGCAAAACTAATACACTGGTTGGCATGAAGAAAACTCTTGTATTCTACAAGGGGAGAGCACCCAAAGGAGAAAAGACCAACTGGGTAATGCACGAGTATCGTTTGGAGGGCAAGTTTGCATATTATGATCTTCCTAAGACTGCAAAGGACGAATGGGTTGTAACAAGAATATTTCAGAAATCTTCTGGAGCTAAAAAGGGTCCATTAGGGCTTGGGAGAAGCTCCAGTTATCCTGATATTGATTCTCCAAATTTGCCTCCACTTTTGGAGTCTCCTTATATCCCCACCAGTGTTGGGGGCGCAATATCTTTTGAAAGTGAATCAGCAGGATCTGACCAGCAGCATGTGACCTGCTTCTCCACGCCAGGTTACCCCAACAATAACCAAGGTTTTGGGCTGCCCCCTAATCAGGTTCAGCAAAACGTGGGTTCCATTTCTTCTGGCATGCCAGATTTCACATTTCTACAAGATATTCTAATGGGCATGAATGCCAACAGCAACCCTACAGAGATCCCACCACAGATGTCTAATCGTGCTTCTCAGCTTCCACCCTATTCCATAGGCCCTAATTCTAACTTGCCTACGTTTGCCAATCTCCTTTATCCCGGTGGCATGCCGCAAAATTCTTACAATAATATCTTCAAGACTCATGCAGACATTGCCAACGACAGGTTTAAGCAATGCAAGATGGAGCCTCCTTCTCCATTGTTCGATGCTTCTCGAACAGTCAAGAACTCAACAGTGCAGCAACCAGGTTCAAGCCACTGGATTAACCCTAGCAGTGGCTATCAACACGGAAATCAAGATAATCTGGAGCCAAAGTATCGAGTCCCTCACCAGCAGCAGCAAATGCAGAATCAAAACATGGTGAGCCTCTCACAGGAAACTGGCCTGAGCACTGAAATCAACACAGATATGTCATCTGTAGTTTCGAGTCAACTGAACCAGGCATATCAGGAAGAGACTCCAGACATGGATTCCCTATGGAATTCATTTTCATGA___AAAGGGTCAACCAATTCACTGTGCTGTTTCTTATAGAACAATCTGTATAT

Fln Alignment:

sp_v1.1_unigene3726___HLPPGFRFHPMDEELVTYYLTQKVLDSSFSCRAIAEVDLNKCEPWDLPDKAKMGEKEWYFFSLRDRKYPTGTRTNRATEAGYWKATGKDREIYRGKTNTLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKFAYYDLPKTAK-------DEWVVTRIFQKSSGAKK
A9NS66______________NLPPGFRFYPTDEELMVHYLCKRVASQPFPIPIIAEIDLYKFDPWQLPEKALFGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGTDKPVTAGLNRMKVGVKKALVFYKGKAPRGIKTNWIMHEYRLADSAS-----KAAKRKGSIRLDDWVLCRIYEKHYASQK

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
1040	33		66		0.997452
1066		33	66		0.997452
1067	33	33	33		0.997753
1068		33		66	0.997452
1466			25	75	0.996473
1467		25	75		0.996473
1473		75		25	0.996473
1475	25		75		0.996473
1477		75		25	0.996473
1479	75			25	0.996473
1483		66	33		0.997452
1484	75			25	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
1356	1369	CTG CTG CTG CTG CT	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain