SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3498

Length: 2713 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene3498
CGTCGTGACCTTGGCTGTCACTCTCTTCTTCGTTATCGCGTTGCCTCTTTGGCGCATTACCTTCGGCCGCTTCTAACCAGCAATTCCATTTGAACCCCCGGTCTCCTGATTTTGTGATCTCTGCTTGAAAGGTCCCCGTCGCCCGTGAAGTTGCTCGCCATATGCAGATCCATAACTGGCCTTGCGCGCAAATTTTGAACCCGCAGCACAGTTGCGTGGTAAGAAATCGCTATAAGAATCCGTTAGGGCCCTGCGAGCGCTAGGCCGCCCTGGGGAATTTACCATGAGGTTAGTAGATTCGAGGTAGCGATCGCTGAAACCAACGCCCATCGTCACAGTTTGTGTAAATGGTCCCGCAGACGAGCTAAGAATTTGCGGGCGAGCTGAGCGGGAGACGATGCAGCCTCCAAACCATCAAACGATGGAGTCTGCGGATTGCTCTTTTAGCTTGTGCGAGTGGCATCCATTTTTATAGCGAGATTTTTTCCGGCCGCCGGAGCCTCTAAACTCGGGTTCACCGCCATCTTTAATGGTGAATAAATTCCTCGGAATATGAATAATTTATTTTAGTTTACAAAGGCTTGAAGTGTTTCCCAACTTCTGAGATTTTAACGCCCCTCCATTTTTGGAATTGCAATACAGGGGTTTGGAACCCTTTCAACCAAAGAACTCTGAAGAAGGTCCACTGTATATCTAATTTCTCTACAGTGATTAATTTCGAATTATTTCTTCCTTGCACGGGTTCGATTCCTCGCAAATTTTACTTTTTAGGTAAGGTTCTAGTAATGTTTGCGAAAGAAATGCAAACATCCGGCCTGACGTTGTCCGAGCTGGATGCCGACGCAGTGGACTGCTGTAGCTGTTTCGCATTCCTGAGAAAGCCGAAGAAGGAGCTGAAGGCTGATTGCCATTTTTACGGCAGTGATTTCTCGCATGATAGTCTGTCGAGCGGTCCCTTCGGGTATTCTGGCAGTTCGTTTCGAAAAGACGGTATGCTGAGCCTCTATGGCTCTTCGTTGAGTTATTCGGATAATGGAGTGCAGCAGGACTGTAAGGTTTTGAAGACACCACCCGCGGCTTCCAACGCAGTTAATTGCAGAGAGATCCCCGTGAAGGAAACCCATAGGGTTGTTCGTACCGAGGACCATAATGGAAATAAAATGATCAATGAATATGTTCGCGAGTGTAAAATTGGAACAGGAAGCTATGGAAAAGTGGTGCTTCATAGGAATTCAAAAGATGGGAAGCGTTATGCCATCAAAGCCTTTCACAAATCTCGGCTTTCTAAATTGCGAGTAGCACCTTCAGAAACTGCAATGACAGATGTCCTAAGAGAGGTTTCAATTATGAAAAAGTTAGATCATCCCAATATTGTTAATTTAGTTGAGGTGATTGATGATCCAGAAACGGATTACTTTTACATGGTCTTGGAATATGTTGAAGGAAGGTGGATCTGCGAAGGATCTGGTCCACCTGGAGGAATTGGAGAAGCTACTGCTAGAAGATATATCCGTGATGTTGTTGCAGGTCTTATGTATCTTCATAGTCATAATATTGTGCATGGAGATATAAAACCAGAAAACCTTTTGGTTGACATCAACGGAAGGGTTAAGATTTGTGACTTTAGCGTAAGTCGGAGTTTTGAGGATGACAATGATGAACTTCGAAGATCTCCTGGTACACCAGTTTTTACGGCACCAGAATGCTGTTTAGGCTTGACATACCATGGTAAAGCTGCAGATGTCTGGGCATTGGGTGTGACACTTTACTGTCTAGTGCTGGGTCAGTATCCTTTTATCGGTGAAACATTGCAGGATACTTATGATAAGATAGTCAACGATGAATTAATCATTCCTGAGGGTATGGATTCTGAACTTGCACACTTACTTGAAGGGCTTCTCTGCAAGGATCCTAACAAAAGGATGACCTTGGATGTTGTTGCAATTCATCCATGGGTTGTAAGAGGCTATGGGCCAGTCCAGCAAGATTTATGGAGATGTGAGCATGGCAGCTTTACAAATTGTACTGAACAGTGTGTAGAGGCTGTAGCTTCTTCAGCAGATCTGTCTAAATCAGTTTAGCATAATATTTTCTGTAGGTGTGAAGGAATGCTTTCTGATTGCTTTCTGGCTGTTGAGAGTTCTGATATGGTGGATCACTTTCTCAAGAGCTTTGTAATCAGGTCATATTTGATGTCTTTCCTCGACTGCTGAGCTTTCAATGGGACATAACATTCGGCTGATAGAAAAAAGCAGGTTAATTTGAAGGTCTGAATAGCAAGACATATTCAGTTCATTCAGGTTGGATATATACAAGCAACAGGAAACACATCTAATCGAGGTAATATTCCGAGGGTCTGAAGTTGGTTCTTTATAGACAGAAGGCAGTGCACATGCACTTTGTGAAGGTACTGGCAGGAGAAGGAGCTCACACCAAGCTTGGATACACAACCATACACAGTAACGGTCTCTTGAAGTGGTATTGTCATGAAGTTTTGTCTTACCAATAATTTCTGAATGCGACGTGTTTTGTTTTGGGAGTGTGTAATTTTCTCTAGTTTGGTGCGAGGGTGAATGGATTGATTCTTTACTATAGATCAGAGAAAGATTGCTGTTTAATATCCAATGTATTGATTTTAAGTGTAATGCATTCCTTTTCTCCCACTACATAGCTATGGTAAATACTCAATAGTATAAAGTAAGATAAATTAATG

Ace file of the UniGene sp_v1.1_unigene3498

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Calcium/calmodulin-dependent protein kinase kinase, putative n=1 Tax=Ricinus communis RepID=B9SWC3_RICCO	-	-	63%
FL-Next	tr=Calcium/calmodulin-dependent protein kinase kinase, putative; Ricinus communis (Castor bean).	-	-	63%
Blast2go	serine threonine-protein kinase-like protein	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	0.0	77%
Blast2go	kinase activity	GO:0016301	Molecular Function	0.0	77%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	77%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	77%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	77%
Blast2go	Protein kinase-like domain	IPR011009	-	77%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	77%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	77%
Blast2go	Calcium/calmodulin-dependent/calcium-dependent protein kinase	IPR020636	-	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9SWC3

Fln msg:

Fln protein: MFAKEMQTSGLTLSELDADAVDCCSCFAFLRKPKKELKADCHFYGSDFSHDSLSSGPFGYSGSSFRKDGMLSLYGSSLSYSDNGVQQDCKVLKTPPAASNAVNCREIPVKETHRVVRTEDHNGNKMINEYVRECKIGTGSYGKVVLHRNSKDGKRYAIKAFHKSRLSKLRVAPSETAMTDVLREVSIMKKLDHPNIVNLVEVIDDPETDYFYMVLEYVEGRWICEGSGPPGGIGEATARRYIRDVVAGLMYLHSHNIVHGDIKPENLLVDINGRVKICDFSVSRSFEDDNDELRRSPGTPVFTAPECCLGLTYHGKAADVWALGVTLYCLVLGQYPFIGETLQDTYDKIVNDELIIPEGMDSELAHLLEGLLCKDPNKRMTLDVVAIHPWVVRGYGPVQQDLWRCEHGSFTNCTEQCVEAVASSADLSKSV*

Protein Length: 433

Fln nts: CGTCGTGACCTTGGCTGTCACTCTCTTCTTCGTTATCGCGTTGCCTCTTTGGCGCATTACCTTCGGCCGCTTCTAACCAGCAATTCCATTTGAACCCCCGGTCTCCTGATTTTGTGATCTCTGCTTGAAAGGTCCCCGTCGCCCGTGAAGTTGCTCGCCATATGCAGATCCATAACTGGCCTTGCGCGCAAATTTTGAACCCGCAGCACAGTTGCGTGGTAAGAAATCGCTATAAGAATCCGTTAGGGCCCTGCGAGCGCTAGGCCGCCCTGGGGAATTTACCATGAGGTTAGTAGATTCGAGGTAGCGATCGCTGAAACCAACGCCCATCGTCACAGTTTGTGTAAATGGTCCCGCAGACGAGCTAAGAATTTGCGGGCGAGCTGAGCGGGAGACGATGCAGCCTCCAAACCATCAAACGATGGAGTCTGCGGATTGCTCTTTTAGCTTGTGCGAGTGGCATCCATTTTTATAGCGAGATTTTTTCCGGCCGCCGGAGCCTCTAAACTCGGGTTCACCGCCATCTTTAATGGTGAATAAATTCCTCGGAATATGAATAATTTATTTTAGTTTACAAAGGCTTGAAGTGTTTCCCAACTTCTGAGATTTTAACGCCCCTCCATTTTTGGAATTGCAATACAGGGGTTTGGAACCCTTTCAACCAAAGAACTCTGAAGAAGGTCCACTGTATATCTAATTTCTCTACAGTGATTAATTTCGAATTATTTCTTCCTTGCACGGGTTCGATTCCTCGCAAATTTTACTTTTTAGGTAAGGTTCTAGTA_-_ATGTTTGCGAAAGAAATGCAAACATCCGGCCTGACGTTGTCCGAGCTGGATGCCGACGCAGTGGACTGCTGTAGCTGTTTCGCATTCCTGAGAAAGCCGAAGAAGGAGCTGAAGGCTGATTGCCATTTTTACGGCAGTGATTTCTCGCATGATAGTCTGTCGAGCGGTCCCTTCGGGTATTCTGGCAGTTCGTTTCGAAAAGACGGTATGCTGAGCCTCTATGGCTCTTCGTTGAGTTATTCGGATAATGGAGTGCAGCAGGACTGTAAGGTTTTGAAGACACCACCCGCGGCTTCCAACGCAGTTAATTGCAGAGAGATCCCCGTGAAGGAAACCCATAGGGTTGTTCGTACCGAGGACCATAATGGAAATAAAATGATCAATGAATATGTTCGCGAGTGTAAAATTGGAACAGGAAGCTATGGAAAAGTGGTGCTTCATAGGAATTCAAAAGATGGGAAGCGTTATGCCATCAAAGCCTTTCACAAATCTCGGCTTTCTAAATTGCGAGTAGCACCTTCAGAAACTGCAATGACAGATGTCCTAAGAGAGGTTTCAATTATGAAAAAGTTAGATCATCCCAATATTGTTAATTTAGTTGAGGTGATTGATGATCCAGAAACGGATTACTTTTACATGGTCTTGGAATATGTTGAAGGAAGGTGGATCTGCGAAGGATCTGGTCCACCTGGAGGAATTGGAGAAGCTACTGCTAGAAGATATATCCGTGATGTTGTTGCAGGTCTTATGTATCTTCATAGTCATAATATTGTGCATGGAGATATAAAACCAGAAAACCTTTTGGTTGACATCAACGGAAGGGTTAAGATTTGTGACTTTAGCGTAAGTCGGAGTTTTGAGGATGACAATGATGAACTTCGAAGATCTCCTGGTACACCAGTTTTTACGGCACCAGAATGCTGTTTAGGCTTGACATACCATGGTAAAGCTGCAGATGTCTGGGCATTGGGTGTGACACTTTACTGTCTAGTGCTGGGTCAGTATCCTTTTATCGGTGAAACATTGCAGGATACTTATGATAAGATAGTCAACGATGAATTAATCATTCCTGAGGGTATGGATTCTGAACTTGCACACTTACTTGAAGGGCTTCTCTGCAAGGATCCTAACAAAAGGATGACCTTGGATGTTGTTGCAATTCATCCATGGGTTGTAAGAGGCTATGGGCCAGTCCAGCAAGATTTATGGAGATGTGAGCATGGCAGCTTTACAAATTGTACTGAACAGTGTGTAGAGGCTGTAGCTTCTTCAGCAGATCTGTCTAAATCAGTTTAG___CATAATATTTTCTGTAGGTGTGAAGGAATGCTTTCTGATTGCTTTCTGGCTGTTGAGAGTTCTGATATGGTGGATCACTTTCTCAAGAGCTTTGTAATCAGGTCATATTTGATGTCTTTCCTCGACTGCTGAGCTTTCAATGGGACATAACATTCGGCTGATAGAAAAAAGCAGGTTAATTTGAAGGTCTGAATAGCAAGACATATTCAGTTCATTCAGGTTGGATATATACAAGCAACAGGAAACACATCTAATCGAGGTAATATTCCGAGGGTCTGAAGTTGGTTCTTTATAGACAGAAGGCAGTGCACATGCACTTTGTGAAGGTACTGGCAGGAGAAGGAGCTCACACCAAGCTTGGATACACAACCATACACAGTAACGGTCTCTTGAAGTGGTATTGTCATGAAGTTTTGTCTTACCAATAATTTCTGAATGCGACGTGTTTTGTTTTGGGAGTGTGTAATTTTCTCTAGTTTGGTGCGAGGGTGAATGGATTGATTCTTTACTATAGATCAGAGAAAGATTGCTGTTTAATATCCAATGTATTGATTTTAAGTGTAATGCATTCCTTTTCTCCCACTACATAGCTATGGTAAATACTCAATAGTATAAAGTAAGATAAATTAATG

Fln Alignment:

sp_v1.1_unigene3498___ADAVDCCSCFAFLRKPKKELKADCHFYGSDFSHDXXXXXXXXXXXXXFRKDGMXXXXXXXXXXXDNG-----VQQDCKVLKTPPAASNAVNCREIPVKETHRVVRTEDHNGNKMINEYVRECKIGTGSYGKVVLHRNSKDGKRYAIKAFHKSRLSKLRVAPSETAMTDVLREVSIMKKLDHPNIVNLVEVIDDPETDYFYMVLEYVEGRWICEGSGPPGGIGEATARRYIRDVVAGLMYLHSHNIVHGDIKPENLLVDINGRVKICDFSVSRSFEDDNDELRRSPGTPVFTAPECCLGLTYHGKAADVWALGVTLYCLVLGQYPFIGETLQDTYDKIVNDELIIPEGMDSELAHLLEGLLCKDPNKRMTLDVVAIHPWVVRGYGPVQQDLWRCEHGS
B9SWC3______________ARAMGCCSCFGFSWKPKRQSRP---VTGRNYNLSQELLLDEEIED---EDDGSYNGDITDTTYEDDGELPNRVKRSEEILRF--REQNGMICRQFPVKETQILIRSEDENGNKMINEYVRECKIGAGSYGKVVLYRSSLDGKHYAIKAFHKSHLLKLRVAPSETAMSDVLREVLIMKMLDHPNIVNLIEVIDDPNTDHFYMVLEYVDGKWVWEGSGPPGGIEEITARKYLRDIVAGLMYLHAHNIVHGDIKPDNLLVTRSGRVKIGDFSVSQVFEDDNDELRRSPGTPVFTAPECCLGLTYHGKAADTWAVGVTLYCMILGQYPFLGETLQDTYDKIVNNPLVLPDEMNAQLRDLLEGLLCKDPKLRLTLDSVVKHSWVIGEDGPISQYFCWCKRNS

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
154			66	33	1.0
936		75		25	0.996473
973		25		75	0.996473
1820	87	12			0.992554
2543			22	77	0.999999
2546	22		77		0.999999
2547	77		11		0.968132

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain