SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3471

Length: 1219 nt

Origin of reads: Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene3471 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PSD; PSD (PAUSED); nucleobase, nucleoside, nucleotide and nucleic acid transmembrane transporter/ tRNA binding	-	-	54%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	41%
Blast2go	trna (nuclear export receptor for trnas)	-	-	64%

Source	GOs	Term	Type	Identity
Blast2go	meristem initiation	GO:0010014	Biological Process	64%
Blast2go	flower development	GO:0009908	Biological Process	64%
Blast2go	tRNA export from nucleus	GO:0006409	Biological Process	64%
Blast2go	nucleobase-containing compound transmembrane transporter activity	GO:0015932	Molecular Function	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Exportin-1/Importin-beta-like	IPR013598	-	0.0	64%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: A9SRJ5

Fln msg: Separated hits, possible frame ERROR between 311 and 350, Distance to subject end: 583 aas, atg_distance in limit (1-15): atg_distance = 11, W2: There is no M at the beginning, your sequence is shorter than subject: 406 - 1001

Fln protein: SFDQTGGIDPRRNLSCTHCQQVKQSPSISQLCIQRFSASNYAEVQFWCLQSLEEIVKLRYTSLDQQEQLFIQNSVMSLVCMEGIENGLNHQSSGLERPVFVKxxxxxxxxxxxxxxYPARWPSVFLDLLSAVSKGPMVVDMFCRIFNALDDELISLDYPRNSEEISIAGRIKDAMREQCVPQIVMSVAMI*VVFYKDSRPELTAMLLETVRRYVTWIDISLVANDSFIPILFEFILSEQRSSVLRGSAANCILAIVSKRMDPKSKISLLRQLQVGRVCGVVLGKEDSEFTSRLGALVTGFAEEVLECARKFDSNEIPNETPAVKEVITEMLDEVMPSVFYFMQYGTEDGDSNTQQFLSNYLSRMKATSPLNSKQMVHIEQILEVILARIHYDPMYRDPLNIPDTVG

Protein Length: 407

Fln nts: TCAGTTTCGATCAGACTGGCGGCATTGATCCTCGTCGAAACCTCAGCTGCACCCATTGTCAACAAGTAAAACAATCACCTTCAATCTCACAGCTTTGCATACAAAGATTCAGTGCCAGCAATTATGCAGAAGTGCAGTTCTGGTGTTTGCAGAGTTTGGAAGAAATTGTCAAGCTCCGCTATACTTCATTAGATCAGCAAGAACAACTGTTTATCCAAAATTCTGTTATGTCCTTAGTTTGTATGGAAGGAATCGAGAATGGTTTGAATCACCAGAGTTCAGGATTAGAGAGACCAGTTTTTGTGAAAAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTATCCGGCCCGGTGGCCATCGGTTTTCCTAGATTTGCTGTCTGCTGTGAGCAAAGGTCCCATGGTTGTAGATATGTTTTGCCGTATTTTTAATGCACTTGATGACGAGTTGATTAGTTTGGATTATCCTCGTAATTCTGAGGAAATCAGCATTGCAGGACGGATAAAAGATGCAATGAGAGAACAATGTGTGCCTCAGATTGTAATGAGCGTGGCTATGATTTAGGTGGTTTTCTACAAAGATTCTAGGCCAGAGTTAACTGCAATGCTTTTAGAAACAGTACGGAGATATGTGACTTGGATTGATATTAGTCTGGTAGCTAATGATAGCTTTATACCTATATTATTTGAGTTTATTTTGTCAGAACAAAGATCTTCAGTGCTTAGAGGTTCTGCAGCCAATTGTATTTTAGCCATAGTATCAAAAAGGATGGATCCAAAATCTAAGATTTCTCTTCTTAGACAGTTACAAGTAGGTCGGGTATGTGGTGTGGTGCTTGGCAAAGAAGATTCTGAATTCACTTCAAGACTTGGTGCTCTTGTTACGGGATTTGCAGAAGAGGTTTTAGAGTGTGCTCGAAAATTTGATTCAAATGAAATTCCTAATGAAACACCCGCAGTGAAAGAAGTTATTACAGAAATGCTGGATGAAGTTATGCCGTCAGTATTTTATTTTATGCAGTATGGGACTGAGGATGGTGATTCTAATACGCAGCAATTTTTGTCAAATTATTTATCCAGAATGAAAGCCACTTCTCCATTGAATAGTAAGCAGATGGTTCACATTGAACAGATATTGGAAGTTATTCTAGCTCGAATTCACTATGATCCAATGTATCGGGATCCACTAAACATTCCTGACACGGTTGGC

Fln Alignment:

sp_v1.1_unigene3471___SFDQTGGI-DPRRNLSCTHCQQVKQSPSISQLCIQRFSASNYAEVQFWCLQSLEEIVKLRYTSLDQQEQLFIQNSVMSLVCMEGIENGLNHQSS--GLERPVFVKNxxxxxxxxxxxxxYPARWPSVFLDLLSAVSKGPMVVDMFCRIFNALDDELISLDYPRNSEEISIAGRIKDAMREQCVPQIVMSVAMI*VVFYKDSRPELTAMLLETVRRYVTWIDISLVANDSFIPILFEFILSEQRSSVLRGSAANCILAIVSKRMDPKSKISLLRQLQVGRVCGVVLGKEDSEFTSRLGALVTGFAEEVLECARKFDSNEIPNETPAVKEVITEMLDEVMPSVFYFMQYGTEDGDSNTQQFLSNYLSRMKATSPLNSKQMVHIEQILEVILARIHYDPMYRDPLNIPDTVG
A9SRJ5______________SFDQSGAVSDELKAQAAAYCEQVKQAPNIIEACLEKIRISQYAEVQFWCLKTLEEVMQQRYKTLDSQKRLFIRSSLMLAFCNFNLDDASITDSAIPLSSRPVFIRNxxxxxxxxxxxxxYPAEWPSAFLDMLGSLSKGPVVVDMFIRVLNALDEEVISFDFPRTEEEAAAATRIKDAMRQQCISQVVAAWYNL-IVMYKGQSPQLAAQVLEMMQKYVAWIDIGLVANDSFVPLLFEFLVSSHEYPQLRGAAAECLLAIVSKRMDAPSKLALLQQLQAGKACSTIMEEQEPEFALKLTALLTGIATEVLECSKRIEVNGACEQSLALAELVTVMLDEVLPPVFYFMQNGDEDMSTTTFQFLNSYVTRMKNSKPINGKQATHLGQILAVVFTRMRYDPSYKDSIDEPDKSG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain