SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3408

Length: 1031 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene3408 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA binding protein	-	-	1.0e-22	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	rna binding	-	-	0.0	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	RNA recognition motif domain	IPR000504	-	0.0	72%
Blast2go	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	72%

Full-Lengther Next Prediction

SNPs (tot: 60)

Position	A %	C %	G %	T %	Probability
320		16		83	0.994512
374		50		33	1.0
378			80	20	0.995493
447			20	80	0.995493
455		80	20		0.995493
458		80	20		0.995493
459	20	80			0.995493
461	20	40		40	1.0
462			20	80	0.995493
463		20		80	0.995493
464	80	20			0.995493
469		80	20		0.995493
471	20		80		0.995493
473			20	80	0.995493
474	20			80	0.995493
481		50	25		0.995533
482	25	25		50	0.995533
483			25	75	0.996473
484		50		50	1.0
485		25	25	50	0.995533
486	33			66	0.997452
490	66	33			0.997452
492	33		66		0.997452
493		66	33		0.997452
494	66		33		0.997452
496	75	25			0.996473
497	25			75	0.996473
500	25			75	0.996473
501	75	25			0.996473
682			87	12	0.992554
689			12	87	0.992554
690		12	87		0.992554
694		87	12		0.992554
698		12		87	0.992554
701	87	12			0.992554
710		85		14	0.993533
921		80		20	1.0
922		78	21		1.0
925	21		7	71	1.0
927		21		78	1.0
930	21	7		71	1.0
932	7	71	21		1.0
933		78		21	1.0
937	16		83		0.999991
944	87	12			0.992554
949	85	14			0.993533
958	85	14			0.993533
959	85	14			0.993533
960		14	85		0.993533
961		14	85		0.993533
963	85			14	0.993533
975			16	83	0.994512
978	16	83			0.994512
979	83	16			0.994512
980		83	16		0.994512
981		83		16	0.994512
985	60		20		0.99255
986	80	20			0.995493
987		40		60	1.0
988	60	20	20		0.99255

SSRs (tot: 1)

Start position	End position	Sequence	Length
659	672	AGG AGG AGG AGG AG	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain