SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3406

Length: 2428 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene3406
CCCAAGAAGTGTGTGTGGGGAAATCCAGTAATGGCAAGCCGAAGGTAGTTGTTTTGCAGGACTTTCTTCATTCAATGTCTGGCACCCGGCTCAACGACATTTCACCTTCCCCACGTCGGTCGACNACCATTCACCATTGCCCATTTTTCTTCACCAGTGGGGTCGCCCAAAAGACCGGGTCCGTTTCTTCCTGGCTTATCGATTTTACCCCCAACTGCAAAGCGGCGCTTAAAATCTTTTCATTTAAATTGTCCGTGTCCGGGCCGTTCAAGTAGGTAAGTAGATGCCTGCCTGCTGCACTCCGTTTCTTTCTTATAGACCCCCCACTCTGTTAATGGCNNCATCTGCTCACATGCTCTGACTCTTTTATTCACAGGACTGTGGGCTAGAAGAAGAAGAAGAAGAAGTGTACGTTCTGTGTGAGAAGAAGGAATATGGCGAAGGGCCAGAGTGATGGCCTCCACTGCGAGGCAGGCTTTGATGTGATTAGCAAATGCAGCTCCAAGGGCCGGGAAAACCAGACCGTGGCCGCGGATCTTGATGGCACCATGCTTAGATCCAGGAGCTCGTTCCCTTATTTCATGCTTGTGGCCATGGAAGGCGGCAGCCTGCTCCGGGGCATGGTGCTCCTCGCCTTCGCTCCCATGGCGTGGTTTCTCTACAATTTCGTCTCCGAGGCTGCCGGGATTCAGCTCCTCATCTTCATTTCCTTCGCCGGGATCAAGATCCGGGATATCGAGCTCGTTTCCCGCGCTGTTTTGCCCAAATTCTATGCTGAGGACGTGCACCCTGAGTCCTGGAGGGTCTTCAGCGCCTTCGGCAAGCGGTACATCGTGACTGCGAATCCAAGAATCATGGTGGAGCCCTTCGTGAAGGGCTATCTTGGGGCTGACAAGGTTCTTGGAACGGAGCTGCAGGTTTCCAGGAGCGGGCGGGCTACTGGTTTCGTCAAGAAGCCTGGTGTGCTGGTTGGGGATTTGAAGAAGTTAGCCGTGGAAGCGGAATTCGGTGATAAAATGCCAGAGCTTGGCCTTGGAGATCGAGAGACAGATCATCCTTTCATGAGCCTCTGCAAGGAGGGGTACATGGTGCCCAAGACGAAGGTGGACGAAGTCCCCACGAACAAACTACTGAGCCCAATCGTCTTCCATGACGGGCGTATGGTGCAGAGACCGCACCCGGGGATCGCCCTCCTCACCTTTCTATGGCTGCCCATAGGCTTATTTCTGTCAATAATTCGAGTCTTCGGCAACATTCCCATCCCAGAGAAATACGTGAAAATATCCTACAAGCTAATGGGCATCAAGCTGGTCGTCAAGGGAACCCCTCCGCCGGCCCCCAGGAAGAAAGGCGAGCGGGGCGTGATGTTCGTGTGCGATCACAGGACGTTGCTGGACCCCGTGGTCGTGGGCGTGGCCCTGGGAAGGAAAGTGAGCGCAGTTACCTACAGCATCAGCCGCTTCTCGGAGATCATCTCGCCCATCAAAACCGTTCGCCTGACACGGGACCGCGAAAAGGACGCCGCCAACATCAAGCGCCTGCTGGAGGAGGGCGACCTGGTGATCTGTCCAGAGGGCACCACGTGCAGGGAGCCCTTTCTACTGAGGTTCAGTGCCCTCTTCGCGGAGCTCACGGACAGGATAGTGCCCGTGGCCATCTGCAACAAGATGAGCATGTTCCATGGAACAACGGTGCGCGGCTGGAAGGGCTTCGACGCCTTTTTCTTCTTCATGAATCCGGTGCCCACCTACGAGATCACGTTCCTGGACCAGTTGCCTACGGAGCTCACCTGCGCCGGAGGCAAATCTCCCATTGAAGTCGCCAATTACATTCAGAGGGTGCTGGCAGCCACTCTTGGCTACGAGTGCACCAATTTCACCCGGAAGGACAAGTACCGGATGCTCGCAGGCAACGATGGCATTGTTTCCATTAAACAGACTGCAACTCCACACAGCAACAACCATAAACAGAGTTGAGCCCACCGAATTCCAGCCCGGGTATTCTAAACCACCATGAATTTAATAATCTCTCCTTATGCTATAATTCCAATTATTACTACATCTCTGCAAATTTTAACTGGTAGTGAAGCATAATCTTCCCAGGAATGTGTACACCTCATAATTGGTATATCTGTTATTGCAAATTAGATTGTAGTTCCAGCAGAATCCCACCAGTGCTTGCACCATAACTGGCACATATGTTCATTATATTGCAAATTATTACTGTAATTTGCCTCTATTGTGGTATTATGCTCAAGGATCAGTAATAATGTAAGTCTCCAGGAATTTTTTTTGCCAGATGTGTGTTTTCTATTACCCCACCATTAGAAAGAGAGGACAGATTGATCTGGTTATTGCACGAGAACTTGATTAGTCCTGTGGTCAAATCAGAAATTTCTCGACAGCGCTTTATATGATATGGAGATTGA

Ace file of the UniGene sp_v1.1_unigene3406 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	glycerol-3-phosphate acyltransferase (EC:2.3.1.51); K13508 glycerol-3-phosphate acyltransferase [EC:2.3.1.15]	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	protein	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	1-acylglycerol-3-phosphate O-acyltransferase.	EC:2.3.1.51	-	0.0	82%

Source	KEGGs	Term	Identity
Blast2go	Glycerolipid metabolism	00561	82%
Blast2go	Glycerophospholipid metabolism	00564	82%
Blast2go	Metabolic pathways	01100	82%

Source	ECs	Term	Type	e value	Identity
AutoFact	Glycerol-3-phosphate O-acyltransferase.	EC:2.3.1.15	-	0.0	73%

Source	KEGGs	Term	Identity
AutoFact	Glycerolipid metabolism	00561	73%
AutoFact	Glycerophospholipid metabolism	00564	73%
AutoFact	Metabolic pathways	01100	73%

Source	GOs	Term	Type	Identity
Blast2go	cutin biosynthetic process	GO:0010143	Biological Process	82%
Blast2go	flower development	GO:0009908	Biological Process	82%
Blast2go	1-acylglycerol-3-phosphate O-acyltransferase activity	GO:0003841	Molecular Function	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXM0

Fln msg:

Fln protein: MAKGQSDGLHCEAGFDVISKCSSKGRENQTVAADLDGTMLRSRSSFPYFMLVAMEGGSLLRGMVLLAFAPMAWFLYNFVSEAAGIQLLIFISFAGIKIRDIELVSRAVLPKFYAEDVHPESWRVFSAFGKRYIVTANPRIMVEPFVKGYLGADKVLGTELQVSRSGRATGFVKKPGVLVGDLKKLAVEAEFGDKMPELGLGDRETDHPFMSLCKEGYMVPKTKVDEVPTNKLLSPIVFHDGRMVQRPHPGIALLTFLWLPIGLFLSIIRVFGNIPIPEKYVKISYKLMGIKLVVKGTPPPAPRKKGERGVMFVCDHRTLLDPVVVGVALGRKVSAVTYSISRFSEIISPIKTVRLTRDREKDAANIKRLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVAICNKMSMFHGTTVRGWKGFDAFFFFMNPVPTYEITFLDQLPTELTCAGGKSPIEVANYIQRVLAATLGYECTNFTRKDKYRMLAGNDGIVSIKQTATPHSNNHKQS*

Protein Length: 515

Fln nts: CCCAAGAAGTGTGTGTGGGGAAATCCAGTAATGGCAAGCCGAAGGTAGTTGTTTTGCAGGACTTTCTTCATTCAATGTCTGGCACCCGGCTCAACGACATTTCACCTTCCCCACGTCGGTCGACaACCATTCACCATTGCCCATTTTTCTTCACCAGTGGGGTCGCCCAAAAGACCGGGTCCGTTTCTTCCTGGCTTATCGATTTTACCCCCAACTGCAAAGCGGCGCTTAAAATCTTTTCATTTAAATTGTCCGTGTCCGGGCCGTTCAAGTAGGTAAGTAGATGCCTGCCTGCTGCACTCCGTTTCTTTCTTATAGACCCCCCACTCTGTTAATGGCgtCATCTGCTCACATGCTCTGACTCTTTTATTCACAGGACTGTGGGCTAGAAGAAGAAGAAGAAGAAGTGTACGTTCTGTGTGAGAAGAAGGAAT_-_ATGGCGAAGGGCCAGAGTGATGGCCTCCACTGCGAGGCAGGCTTTGATGTGATTAGCAAATGCAGCTCCAAGGGCCGGGAAAACCAGACCGTGGCCGCGGATCTTGATGGCACCATGCTTAGATCCAGGAGCTCGTTCCCTTATTTCATGCTTGTGGCCATGGAAGGCGGCAGCCTGCTCCGGGGCATGGTGCTCCTCGCCTTCGCTCCCATGGCGTGGTTTCTCTACAATTTCGTCTCCGAGGCTGCCGGGATTCAGCTCCTCATCTTCATTTCCTTCGCCGGGATCAAGATCCGGGATATCGAGCTCGTTTCCCGCGCTGTTTTGCCCAAATTCTATGCTGAGGACGTGCACCCTGAGTCCTGGAGGGTCTTCAGCGCCTTCGGCAAGCGGTACATCGTGACTGCGAATCCAAGAATCATGGTGGAGCCCTTCGTGAAGGGCTATCTTGGGGCTGACAAGGTTCTTGGAACGGAGCTGCAGGTTTCCAGGAGCGGGCGGGCTACTGGTTTCGTCAAGAAGCCTGGTGTGCTGGTTGGGGATTTGAAGAAGTTAGCCGTGGAAGCGGAATTCGGTGATAAAATGCCAGAGCTTGGCCTTGGAGATCGAGAGACAGATCATCCTTTCATGAGCCTCTGCAAGGAGGGGTACATGGTGCCCAAGACGAAGGTGGACGAAGTCCCCACGAACAAACTACTGAGCCCAATCGTCTTCCATGACGGGCGTATGGTGCAGAGACCGCACCCGGGGATCGCCCTCCTCACCTTTCTATGGCTGCCCATAGGCTTATTTCTGTCAATAATTCGAGTCTTCGGCAACATTCCCATCCCAGAGAAATACGTGAAAATATCCTACAAGCTAATGGGCATCAAGCTGGTCGTCAAGGGAACCCCTCCGCCGGCCCCCAGGAAGAAAGGCGAGCGGGGCGTGATGTTCGTGTGCGATCACAGGACGTTGCTGGACCCCGTGGTCGTGGGCGTGGCCCTGGGAAGGAAAGTGAGCGCAGTTACCTACAGCATCAGCCGCTTCTCGGAGATCATCTCGCCCATCAAAACCGTTCGCCTGACACGGGACCGCGAAAAGGACGCCGCCAACATCAAGCGCCTGCTGGAGGAGGGCGACCTGGTGATCTGTCCAGAGGGCACCACGTGCAGGGAGCCCTTTCTACTGAGGTTCAGTGCCCTCTTCGCGGAGCTCACGGACAGGATAGTGCCCGTGGCCATCTGCAACAAGATGAGCATGTTCCATGGAACAACGGTGCGCGGCTGGAAGGGCTTCGACGCCTTTTTCTTCTTCATGAATCCGGTGCCCACCTACGAGATCACGTTCCTGGACCAGTTGCCTACGGAGCTCACCTGCGCCGGAGGCAAATCTCCCATTGAAGTCGCCAATTACATTCAGAGGGTGCTGGCAGCCACTCTTGGCTACGAGTGCACCAATTTCACCCGGAAGGACAAGTACCGGATGCTCGCAGGCAACGATGGCATTGTTTCCATTAAACAGACTGCAACTCCACACAGCAACAACCATAAACAGAGTTGA___GCCCACCGAATTCCAGCCCGGGTATTCTAAACCACCATGAATTTAATAATCTCTCCTTATGCTATAATTCCAATTATTACTACATCTCTGCAAATTTTAACTGGTAGTGAAGCATAATCTTCCCAGGAATGTGTACACCTCATAATTGGTATATCTGTTATTGCAAATTAGATTGTAGTTCCAGCAGAATCCCACCAGTGCTTGCACCATAACTGGCACATATGTTCATTATATTGCAAATTATTACTGTAATTTGCCTCTATTGTGGTATTATGCTCAAGGATCAGTAATAATGTAAGTCTCCAGGAATTTTTTTTGCCAGATGTGTGTTTTCTATTACCCCACCATTAGAAAGAGAGGACAGATTGATCTGGTTATTGCACGAGAACTTGATTAGTCCTGTGGTCAAATCAGAAATTTCTCGACAGCGCTTTATATGATATGGAGATTGA

Fln Alignment:

sp_v1.1_unigene3406___MAKGQSDGLHCEAGFDVISKCSSKGRENQTVAADLDGTMLRSRSSFPYFMLVAMEGGSLLRGMVLLAFAPMAWFLYNFVSEAAGIQLLIFISFAGIKIRDIELVSRAVLPKFYAEDVHPESWRVFSAFGKRYIVTANPRIMVEPFVKGYLGADKVLGTELQVSRSGRATGFVKKPGVLVGDLKKLAVEAEFGDKMPELGLGDRETDHPFMSLCKEGYMVPKTKVDEVPTNKLLSPIVFHDGRMVQRPHPGIALLTFLWLPIGLFLSIIRVFGNIPIPEKYVKISYKLMGIKLVVKGTPPPAPRKKGERGVMFVCDHRTLLDPVVVGVALGRKVSAVTYSISRFSEIISPIKTVRLTRDREKDAANIKRLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVAICNKMSMFHGTTVRGWKGFDAFFFFMNPVPTYEITFLDQLPTELTCAGGKSPIEVANYIQRVLAATLGYECTNFTRKDKYRMLAGNDGIVSIKQTATPHSNNHKQS
A9NXM0______________MAKGQS-GLDCQGLFDVISKCSSKGRENQTVAADLDGTMLRSRSSFPYFMLVAMEGGSLLRGMVLLACAPMAWFLYNFISEAAGIQLLIFISFAGLKIRDIELVSRAVLPKFYAEDVHPESWRVFSAFGKRYIVTANPRIMVEPFVKGYLGADKVLGTELQVSRSGRATGFVKKPGVLVGDLKKAAVEAEFGDKLPELGLGDRETDHPFMSLCKEGYMVPKMKVDEVPTNKLMSPIVFHDGRLVQRPNPGAALLTFLWLPIGFFLAQFRVFGNIPIPEKYVKISYKIMGIKLVVKGTPPPAPKKKGERGVLFVCDHRTLLDPVIVAVALGRKVSAVTYSISRFSEIISPIKTVRLTRDRERDAANIKRLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVAICNKMSMFHGTTVRGWKGFDPFFFFMNPVPTYEVTFLDQLPTELTCAGGKSPIEVANYIQRVLAATLGYECTNFTRKDKYRMLAGNDGIVSLNKTATARSNNHKQN

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
1144	87		12		0.992554
1330		16		83	0.994512
1380			16	83	0.994512
1384	16			83	0.994512
1386	16			83	0.994512
1387		83	16		0.994512
1388		16		83	0.994512
1390	16		83		0.994512
1392			16	83	0.994512
1393		83	16		0.994512
1397	83		16		0.994512
1399		16	83		0.994512
1594	83		16		0.994512
1846	87	12			0.992554
1848		12	87		0.992554
1921		83		16	0.994512
1978	83	16			0.994512
1979		16		83	0.994512
1981	83	16			0.994512
1982	16	83			0.994512
1994			80	20	0.995493
1995		80		20	0.995493
1996		80		20	0.995493
1997	80			20	0.995493
2055		25		75	0.996473
2092		33	66		0.997452
2093		33	66		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
2022	2041	CTT CTT CTT CTT CTT CTT CT	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain