SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3230

Length: 1675 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3230

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9RWJ4_RICCO	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	36%
Blast2go	protein	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	flower development	GO:0009908	Biological Process	80%
Blast2go		GO:0016481	Biological Process	80%
Blast2go	protein heterodimerization activity	GO:0046982	Molecular Function	80%
Blast2go	nucleus	GO:0005634	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Blast2go	WD40 repeat	IPR001680	-	80%
Blast2go	Coatomer, WD associated region	IPR006692	-	80%
Blast2go	WD40 repeat-like-containing domain	IPR011046	-	80%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	80%
Blast2go	WD40-repeat-containing domain	IPR017986	-	80%
Blast2go	WD40 repeat, subgroup	IPR019781	-	80%
Blast2go	WD40 repeat 2	IPR019782	-	80%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPC1

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 218 aas, putative chimeric sequence, your sequence is shorter than subject: 91 - 314

Fln protein: MDVSNGFSFNEFTCLRASTSKVVCCHFSSDGKLLASAGHDKKAVLWNMDTLKQKSTLDEHSHLITDVRFSPNSTRLATSSFDKSVKVWDA*

Protein Length: 92

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTGGTGAAGTTGGTTCCTTGGATGATAATGTCGAGTCATTTTTGTCACAAGATGATGGAGATATAAGGGATGGTCTCTTTGGGACAATAAAGCGTAGTCCTACTGAGCACAAC_-_ATGGATGTCTCAAATGGTTTTTCTTTCAATGAATTTACCTGCCTTCGTGCAAGTACTAGTAAGGTAGTTTGCTGCCATTTTTCTTCAGATGGAAAGTTGTTAGCAAGTGCTGGCCATGATAAAAAGGCTGTTCTCTGGAATATGGACACTTTAAAACAGAAAAGCACTCTTGATGAACATTCTCATCTGATTACAGATGTCAGGTTTAGTCCCAATTCTACTCGTTTGGCAACATCATCCTTTGATAAGAGTGTCAAAGTATGGGATGCGTGA___AAATCCTAGCTACCCATTCCGCACATTAACTGGACATTTGACCTCAGTCATGTCACTAGATTTCCACTCAAATAATGGGGGGGATCTTCTCTGCTCTTGTGACAGTAACAGTGAAATTCGTTATTGGAGTGTTGGCCAAGGTGCATGCACAAGAGTTTCCAAGGGTGGCATGGCACAAGTGAGATTCCAACCTTGCGGGGGACGATTGCTTGCTGCTGCAGCAGAGAATATAGTATCCATTTTTGATGTGGAGACTGATACTTGCATACATTCTTTACAGAGGCATATCAAACCTGTCCACTCAGTTTGCTGGGATGCAACTGGTGATTTCTTAGCATCTGTCAGTGAGGATTCTGTAAGGGTTTGGTCGTTAGCCTCTCGTGGAGAATGCATTCATGAACTCAGCTGTAATGGTAACAAGTTCCATTCTTGTGTCTTCCATCCAAAATACTCGTCACTCTTGGTCATTGGCTGTTACCAGTCTTTGGAATTATGGAATATGGCAGAGAACAAAAGCATGACTCTTCCTGCTCATGAAGGTCTCATTGCAGGGTTAGCTCAGTCTCCTGCAACTGGAATGGTTGCATCTGCAAGTCATGACAAATGCGTGAAGCTATGGAAATAATATGATAGCATACAGACTTGGTACTCAAGGTTGGTGAAAAATTTAAATACCTTTGTAAATGAGAGATAGTACTGAACACAGTAAGATGATTTGCCTCCACAGTTATATGAAAATGAATCAGGCTACAGGAATAGCAGTTCGCGGCCCTTTCTTTTGAATGAATTTTAGGTGATTTATAGAGTTTGTAAAGGGATGTACTGTATTTCTGGTAGTTTGAAAGCTGGCCATTATTAATGCCTGGGCTTCTCATATATTATAAATTATAATATACTCTAGTGCTATGTCAACCACAGTTGTTCTGAAGGTTATCTGAATATCTTTCTTCAGAATTTCAAGAGAAAAAGGGGAAACTCTGTTTATGCTCACTCAAATAAATTGAAGCTTAAACATTCATCCTCTATGCCTTATTTATAGGAGATCCTGTCTCGTAAAACTTTACGAAGATCTGAACACTTACAAGGAAGTTGAGGGTTACCCTAAGGCCTATTTTTTCCTTCCGGTTGTCACATTTGTACAATAGATACTTCAATATTAAAATTTCCATATACAGGGTATAGTTGTGGAAGGCATAAAGTCTAATCTGTTTTTGTAATTAGCTAGTAATTGGTAAAACTCTTCCATTAGCAAAATGTGTTAC

Fln Alignment:

sp_v1.1_unigene3230___FSSDGKLLASAGHDKKAVLWNMDTLKQKSTLDEHSHLITDVRFSPNSTRLATSSFDKSVKVWD
A9NPC1______________FSADGKLLGSASADKSVRIWSAGDGSAKRELQGHAEGVSDMAWSSDSHYVCSASDDKTLRIWD

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
38			11	88	0.923564
40		11	88		0.923564
43	11			88	0.923564
50	88	11			0.923564
55	88	11			0.923564
58		11	88		0.923564
160	12			87	0.992554
161	12			87	0.992554
167	12			87	0.992554
170	87	12			0.992554
177			12	87	0.992554
223		14		85	0.993533
225		14		57	1.0
1184		71		28	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain