SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3196

Length: 2388 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene3196
TTGCTAGCTGAGAAATGCGTTTCTGCACAGATCACAATTATATGAGGATTGGGTTCATCATCAAAGGCTCTTCTGTTACCAGCTTTATCAGACCAGAAGGGCGCATATTATTGGAGGAGCGAGCGCTCAATGCAGAGAACAAGCTGCAGGTCTACCACATTCGGTCTGGATTGGGGATCTTCAACTACATTGAGTTCAAATGCAGAGCCATTCCGCTTCAGGATCAAACTGATTCTAGGCCTCTAGAACACTCATTTCTGTGACATAAACAGGATCTGAATCCTCCTGTTCAAACATGGGCACTTCAAGTACAGGCTTTCTGAACAATGAATTGTCCAAGAAGACTTCAATACTTGGCCTCAAGTTGTGGGTTGTGATAGGAATATGTGTAGGAGCATTCATAATTCTGATATTGTTGTGTTTATCAGTATGGTTAACTTCAAAGAGGAAATCCAAGAGAATACCAAAGAAATATGCATCTACGGCAATGATACCGGTGGTGTCCAAGGAGATCCAGGAGGTAAAGGTTGATACAGTACCGTTGCGTGCAGGACATGGCCATAGTACTCTGAGAGATGATACAGAGAAGGTTGTGGTGCAGGTAGGAACTGGGAAGCGTTCCAATACCCCTTATGACAACGAGAGAGTTAATTCTGATGTGGATGCAATCCATGGAAGGCCGTCCCTCAGAGGCCAAGAGATTGTAGGCAGGGGCTATCATGCAAGGGCAGCTCCTATTGATGAAAAACATAAAATATGTGTTGAGTTAGGCAAGGATCACAGGATTATATCCCCCGAGAAGCCTTCTTCACATTGCAGCGGCGAGGCGCGGTCCTCGGATACATTGTCTCCAGCTGTCCCAGAAGTATCTCATNNGGGTTGGGGTCATTGGTACACTCTCAGAGAGCTTGAGATTGCAACCAATTGCTTCTCTGATGACCATGTTATTGGTGAGGGTGGTTACGGTATTGTCTACCACGGTCAATTGACGGATGGTACTTCTGTCGCTGTAAAGAACCTGCTAAACAACAAGGGTCAGGCTGAGAAGGAGTTTAGAGTTGAGGTTGAAGCTATTGGAAGAGTCAGGCACAAATGTTTGGTGCGGTTGCTTGGTTACTGTGCTGAAGGCGCACACAGGATGCTTGTCTATGAGTTTGTAGACAATGGTAACTTGGAACAATGGCTGCATGGAGATGTAGGACCTAGCAGTCCTCTCACGTGGGATATTAGGATGAAGATCATTCTTGGAACAGCCAAAGGGCTAGCATATCTGCATGAAGGCCTAGAACCAAAAGTTGTCCATCGGGATGTGAAATCAAGCAACATACTGCTGGATAGGCAATGGAATCCAAAGGTGTCAGACTTTGGCCTGGCAAAACTCATAGGTTCTGAGAGAAGCTATGTCACAACCCGTGTTATGGGAACTTTTGGGTACGTAGCACCTGAGTATGCCAGTACCGGAATGCTCAACGAGAGGAGTGATGTCTACAGTTTTGGGGTGCTTATCATGGAGATAATTTGCGGTAGAAACCCAGTTGATTATGCCAGACAGGCAAATGAGGTCAATTTGGTAGACTGGTTGAAAACAATGGTTGGAAGCCGGAGGTCTGATGAAGTAGTAGACCCAAAAATGGATGTGAAGCCATCTTCACGGGCTTTAAAACGAGCGTTGCTGGTTGCTCTTCGTTGTGTTGATCCAGATGCTCAGAAGAGGCCAAAGATGGGTCATATAATACACATGCTTGAAGCAGATGAAATTCCTTTCCGTGATGATCGTCGAAGTGGGAGAGAGGCATCTCGACTTCGTCGCCAGGATTCACAAGGAGACAGAACTCTGAAGCCAAGTGACAAACGGACTATAGAGATGGATGATAATAGTGATGGGGAAATGGGCAGCAGCAGTAATGCTGGCCATAGGGCGAGGTGGAGGAGATATGAAGTGTAAAGGATTGGAAGCTCAGAATCTCCTGTTGGTGTGCGTTGGGAGTGCATTTTTACTGAGCTTTACTGGTCATAATACAAGATTGAGGAGATAAGAACAATAGAGATTGTACAAGCTCACAATGTGAAAACAATGCACATTTGGGAATGAATTTTTCACTGTGCATTGTGGATGAAAAGGAGGATCGGATTTCTCTTCAGCTCACAGTTTATTCATTGTATGCACACATACAAGTGTGCTACTGTCAACTAATTAAGTAAACAGCCGTTTGGTTTATAGGCTGTTTTCTGTTGTGAATTCCCTTGTTTATGAGAGAGCTTGTAATATAAAGAGAAGTGATGTTTAAGGCTTTGAAATCAAATTTCTGTGGCTAGTGTAATTTATTAATTCTTATTATTTCCATTGTATATTAACACAATGGACTCTTCAAAGAAAATACATTTTCT

Ace file of the UniGene sp_v1.1_unigene3196

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine-protein kinase PBS1, putative n=1 Tax=Ricinus communis RepID=B9R799_RICCO	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	brassinosteroid insensitive 1-associated receptor kinase 1	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	kinase activity	GO:0016301	Molecular Function	0.0	70%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PPY3

Fln msg: your sequence is longer than subject: 550 - 295

Fln protein: MGTSSTGFLNNELSKKTSILGLKLWVVIGICVGAFIILILLCLSVWLTSKRKSKRIPKKYASTAMIPVVSKEIQEVKVDTVPLRAGHGHSTLRDDTEKVVVQVGTGKRSNTPYDNERVNSDVDAIHGRPSLRGQEIVGRGYHARAAPIDEKHKICVELGKDHRIISPEKPSSHCSGEARSSDTLSPAVPEVSHTGWGHWYTLRELEIATNCFSDDHVIGEGGYGIVYHGQLTDGTSVAVKNLLNNKGQAEKEFRVEVEAIGRVRHKCLVRLLGYCAEGAHRMLVYEFVDNGNLEQWLHGDVGPSSPLTWDIRMKIILGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRQWNPKVSDFGLAKLIGSERSYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGVLIMEIICGRNPVDYARQANEVNLVDWLKTMVGSRRSDEVVDPKMDVKPSSRALKRALLVALRCVDPDAQKRPKMGHIIHMLEADEIPFRDDRRSGREASRLRRQDSQGDRTLKPSDKRTIEMDDNSDGEMGSSSNAGHRARWRRYEV*

Protein Length: 551

Fln nts: TTGCTAGCTGAGAAATGCGTTTCTGCACAGATCACAATTATATGAGGATTGGGTTCATCATCAAAGGCTCTTCTGTTACCAGCTTTATCAGACCAGAAGGGCGCATATTATTGGAGGAGCGAGCGCTCAATGCAGAGAACAAGCTGCAGGTCTACCACATTCGGTCTGGATTGGGGATCTTCAACTACATTGAGTTCAAATGCAGAGCCATTCCGCTTCAGGATCAAACTGATTCTAGGCCTCTAGAACACTCATTTCTGTGACATAAACAGGATCTGAATCCTCCTGTTCAAAC_-_ATGGGCACTTCAAGTACAGGCTTTCTGAACAATGAATTGTCCAAGAAGACTTCAATACTTGGCCTCAAGTTGTGGGTTGTGATAGGAATATGTGTAGGAGCATTCATAATTCTGATATTGTTGTGTTTATCAGTATGGTTAACTTCAAAGAGGAAATCCAAGAGAATACCAAAGAAATATGCATCTACGGCAATGATACCGGTGGTGTCCAAGGAGATCCAGGAGGTAAAGGTTGATACAGTACCGTTGCGTGCAGGACATGGCCATAGTACTCTGAGAGATGATACAGAGAAGGTTGTGGTGCAGGTAGGAACTGGGAAGCGTTCCAATACCCCTTATGACAACGAGAGAGTTAATTCTGATGTGGATGCAATCCATGGAAGGCCGTCCCTCAGAGGCCAAGAGATTGTAGGCAGGGGCTATCATGCAAGGGCAGCTCCTATTGATGAAAAACATAAAATATGTGTTGAGTTAGGCAAGGATCACAGGATTATATCCCCCGAGAAGCCTTCTTCACATTGCAGCGGCGAGGCGCGGTCCTCGGATACATTGTCTCCAGCTGTCCCAGAAGTATCTCATacGGGTTGGGGTCATTGGTACACTCTCAGAGAGCTTGAGATTGCAACCAATTGCTTCTCTGATGACCATGTTATTGGTGAGGGTGGTTACGGTATTGTCTACCACGGTCAATTGACGGATGGTACTTCTGTCGCTGTAAAGAACCTGCTAAACAACAAGGGTCAGGCTGAGAAGGAGTTTAGAGTTGAGGTTGAAGCTATTGGAAGAGTCAGGCACAAATGTTTGGTGCGGTTGCTTGGTTACTGTGCTGAAGGCGCACACAGGATGCTTGTCTATGAGTTTGTAGACAATGGTAACTTGGAACAATGGCTGCATGGAGATGTAGGACCTAGCAGTCCTCTCACGTGGGATATTAGGATGAAGATCATTCTTGGAACAGCCAAAGGGCTAGCATATCTGCATGAAGGCCTAGAACCAAAAGTTGTCCATCGGGATGTGAAATCAAGCAACATACTGCTGGATAGGCAATGGAATCCAAAGGTGTCAGACTTTGGCCTGGCAAAACTCATAGGTTCTGAGAGAAGCTATGTCACAACCCGTGTTATGGGAACTTTTGGGTACGTAGCACCTGAGTATGCCAGTACCGGAATGCTCAACGAGAGGAGTGATGTCTACAGTTTTGGGGTGCTTATCATGGAGATAATTTGCGGTAGAAACCCAGTTGATTATGCCAGACAGGCAAATGAGGTCAATTTGGTAGACTGGTTGAAAACAATGGTTGGAAGCCGGAGGTCTGATGAAGTAGTAGACCCAAAAATGGATGTGAAGCCATCTTCACGGGCTTTAAAACGAGCGTTGCTGGTTGCTCTTCGTTGTGTTGATCCAGATGCTCAGAAGAGGCCAAAGATGGGTCATATAATACACATGCTTGAAGCAGATGAAATTCCTTTCCGTGATGATCGTCGAAGTGGGAGAGAGGCATCTCGACTTCGTCGCCAGGATTCACAAGGAGACAGAACTCTGAAGCCAAGTGACAAACGGACTATAGAGATGGATGATAATAGTGATGGGGAAATGGGCAGCAGCAGTAATGCTGGCCATAGGGCGAGGTGGAGGAGATATGAAGTGTAA___AGGATTGGAAGCTCAGAATCTCCTGTTGGTGTGCGTTGGGAGTGCATTTTTACTGAGCTTTACTGGTCATAATACAAGATTGAGGAGATAAGAACAATAGAGATTGTACAAGCTCACAATGTGAAAACAATGCACATTTGGGAATGAATTTTTCACTGTGCATTGTGGATGAAAAGGAGGATCGGATTTCTCTTCAGCTCACAGTTTATTCATTGTATGCACACATACAAGTGTGCTACTGTCAACTAATTAAGTAAACAGCCGTTTGGTTTATAGGCTGTTTTCTGTTGTGAATTCCCTTGTTTATGAGAGAGCTTGTAATATAAAGAGAAGTGATGTTTAAGGCTTTGAAATCAAATTTCTGTGGCTAGTGTAATTTATTAATTCTTATTATTTCCATTGTATATTAACACAATGGACTCTTCAAAGAAAATACATTTTCT

Fln Alignment:

sp_v1.1_unigene3196___MGTSSTGFLNNELSKKTSILGLKLWVVIGICVGAFIILILLCLSVWLTSKRKSKRIPKKYASTAMIPVVSKEIQEVKVDTVPLRAGHGHSTLRDDTEKVVVQVGTGKRSNTPYDNERVNSDVDAIHGRPSLRGQEIVGRGYHARAAPIDEKHKICVELGKDHRIISPEKPSSHCSGEARSSDTLSPAVPEVSHTGWGHWYTLRELEIATNCFSDDHVIGEGGYGIVYHGQLTDGTSVAVKNLLNNKGQAEKEFRVEVEAIGRVRHKCLVRLLGYCAEGAH
C0PPY3______________MGTSSTGFLNNELSKKTSILGLKLWVVIGICVGAFIVLILFCLSVWLTSKRKSKRIPKKYPSTSKIPMVSKEIQEVKVDPIPLRAGHGHGTARDDTEKVVVQVGTGKRSNTPYDNERVNPDVGAINGRQCLRGQEIAGRGYHARAGPIDERHQICVELGKDHRIISPEKPSSHCSGEARSSDTLSPAVPEVSHLGWGHWYTLRELEIATDCFSDDHVIGEGGYGIVYHGQLTDGTSVAVKNLLNNRGQAEKEFKVEVEAIGRVRHKCLVRLLGYCAEGAH

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
428		14	85		0.993533
429			14	85	0.993533
431			14	85	0.993533
433		14		85	0.993533
435	85			14	0.993533
437			14	85	0.993533
438	85	14			0.993533
443		14		85	0.993533
445	85	14			0.993533
447	14			85	0.993533
885			33	66	0.997452
886			33	66	0.997452
905		66		33	0.997452
1231			90	10	0.90298
1315			12	87	0.992554
1378		16		83	0.994512
1457	14		85		0.993533
1471		80		20	0.995493
1972		85		14	0.993533
1986		11	88		0.923564
1993	11	11	77		0.968132
1998		11	88		0.923564
1999	88			11	0.923564
2050	11		88		0.923564
2076	90		10		0.90298
2077	90			10	0.90298
2078		10		90	0.90298
2083	90	10			0.90298
2084	90	10			0.90298
2085	90			10	0.90298
2086		90		10	0.90298
2087	90		10		0.90298
2088	90		10		0.90298
2094	90			10	0.90298
2095		10		90	0.90298
2312	16			83	0.994512
2314	83	16			0.994512
2315	83	16			0.994512
2364	50		50		1.0
2368	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain