SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3177

Length: 967 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3177

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cyclic AMP receptor, putative n=1 Tax=Ricinus communis RepID=B9S014_RICCO	-	-	68%
FL-Next	sp=G-protein coupled receptor 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	67%
Blast2go	g protein-coupled receptor	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	mitotic cell cycle	GO:0000278	Biological Process	78%
Blast2go	maintenance of seed dormancy	GO:0010231	Biological Process	78%
Blast2go	response to cytokinin stimulus	GO:0009735	Biological Process	78%
Blast2go	tyrosine biosynthetic process	GO:0006571	Biological Process	78%
Blast2go	flower development	GO:0009908	Biological Process	78%
Blast2go	L-phenylalanine biosynthetic process	GO:0009094	Biological Process	78%
Blast2go	response to low fluence blue light stimulus by blue low-fluence system	GO:0010244	Biological Process	78%
Blast2go	protein binding	GO:0005515	Molecular Function	78%

Source	InterPros	Term	Type	Identity
Blast2go	GPCR, family 2-like	IPR017981	-	78%
Blast2go	G-protein-coupled receptor, GCR1 putative	IPR022340	-	78%
Blast2go	GCR1-cAMP receptor	IPR022343	-	78%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: O04714

Fln msg: Distance to subject end: 105 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 216 - 326

Fln protein: MAGELTQAEKETLAAVNVGASALSFAGSAFIVLCYVLFRQLRKFSFKLIFYLALSDMFCSLFNILGDPGKGFFCYAQGYTTHFVCVASFLWTTTIAFTLHRTVVRHKTDVEELGAIFHLYVWGTSLVMTIIPSIGDGYGQAGAWCLVKTTSRATKVLQFITFYAPLWGAILFNGFTYFPVSGMLNNATQMAAGMSDRQQQTDSRVDMKGLFNSIAY

Protein Length: 217

Fln nts: ATGGGCGGCATAACATATATTGTCGTCGTGACCTTGGCTGTCAGTTCATCTATTTTATAGCTTAAAATTAAAATTGAATTAGTTTTATCATAGCTTCTTCTATTTCGGCTTAAATTCGAGCAATTTTATCACTGTTCGATGAAATCCTGTTTTGTGCATTCGATCTGTCTGAAATCAGTGGATATCCGGATAATTTGTCTCCGAGTGTCGATTGATTTACAGCAATATGATGATTTTAAGTCTGGAATTCGGCGTCAGTGGTTATGACCAGGAACGGGTGAGAAAACAGACCGAAATTCGTAGGCGTTAGGGCAAAAAA_-_ATGGCGGGGGAATTGACCCAAGCGGAGAAAGAAACCCTTGCTGCCGTTAATGTCGGGGCATCGGCATTATCGTTTGCAGGATCGGCTTTCATCGTGCTCTGTTATGTGCTTTTCAGACAGCTTCGCAAGTTTTCGTTCAAGCTGATATTCTACTTAGCATTATCTGACATGTTTTGCAGCCTTTTCAATATACTTGGGGATCCAGGAAAGGGATTCTTCTGCTATGCACAAGGCTATACAACACATTTCGTTTGTGTTGCATCTTTTCTTTGGACAACTACTATAGCTTTCACTCTCCATCGTACTGTTGTGAGACATAAAACTGATGTTGAAGAGCTCGGAGCCATATTTCATTTGTATGTATGGGGAACTTCACTTGTCATGACAATTATACCTTCGATTGGTGATGGCTATGGGCAAGCAGGTGCTTGGTGCTTGGTTAAAACAACATCAAGGGCTACAAAGGTCCTCCAATTTATTACTTTCTATGCTCCTCTATGGGGAGCAATTCTATTCAACGGTTTCACATACTTTCCAGTGAGTGGCATGCTTAACAATGCCACTCAGATGGCAGCAGGCATGTCAGATCGGCAACAACAAACCGATTCAAGGGTTGATATGAAGGGCTTGTTTAATTCAATTGCATAT

Fln Alignment:

sp_v1.1_unigene3177___GELTQAEKETLAAVNVXXXXXXXXXXXXIVLCYVLFRQLRKFSFKLIFYLALSDMFCSLFNILGDPGKGFFCYAQGYTTHFVCVASFLWTTTIAFTLHRTVVRHKTDVEELGAIFHLYVWGTSLVMTIIPSIGDGYGQAGAWCLVKTTSRATKVLQFITFYAPLWGAILFNGFTYFPVSGMLNNATQMAAGMSDRQQQTDSRVDMKGL
O04714______________GGLTAGDRSIITAINTGASSLSFVGSAFIVLCYCLFKELRKFSFKLVFYLALSDMLCSFFLIVGDPSKGFICYAQGYTTHFFCVASFLWTTTIAFTLHRTVVKHKTDVEDLEAMFHLYVWGTSLVVTVIRSFGNNHSHLGPWCWTQTGLKG-KAVHFLTFYAPLWGAILYNGFTYFQVIRMLRNARRMAVGMSDRVDQFDNRAELKVL

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
544		12		87	0.992554
546		87		12	0.992554
547		12		87	0.992554
548	87		12		0.992554
551	12	87			0.992554
552	87	12			0.992554
554	87			12	0.992554
555	87			12	0.992554
560	87		12		0.992554
564	87			12	0.992554
565	87	12			0.992554
566	12	87			0.992554
589		12		87	0.992554
862	50	50			1.0
866		50	50		1.0
870		50	50		1.0
871	50		50		1.0
874			50	50	1.0
877		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain