SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3148

Length: 1009 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3148

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SNI1; SNI1; transcription repressor	-	-	4.0e-31	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	sni1 transcription repressor	-	-	0.0	60%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of systemic acquired resistance	GO:0010113	Biological Process	60%
Blast2go	somatic cell DNA recombination	GO:0016444	Biological Process	60%
Blast2go	histone modification	GO:0016570	Biological Process	60%
Blast2go	transcription repressor activity	GO:0016564	Molecular Function	60%
Blast2go	nucleus	GO:0005634	Cellular Component	60%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUM3

Fln msg: your sequence is shorter than subject: 243 - 302

Fln protein: KNLVISSLHIMAATDKEPFDNNDKGHRADGIFKKSLQDLDSASYLAEAEIRHTLRLSVQTLLTMMMELDTIKKEADKKGRTSRSDGSRTPVLEIVINELSYNKELIGPFLQALTEPKWKMDIILTYLLKYFSRYITKNVGSDIKATAIQDIFNFFSDVTNARNIVKRIGADLLQLLLVHGFQAYFSLRKGSDFMNSSGEDVLLKETCKSFIATFQNLQSVYRNFELVAVGRDALFTAATILS*

Protein Length: 244

Fln nts: GAAAAACTTAGTTATATCATCTCTTCACATTATGGCTGCAACAGACAAGGAGCCCTTTGACAATAATGACAAAGGACACAGAGCAGATGGTATATTCAAAAAATCATTACAGGACCTTGACAGTGCATCATATCTGGCTGAGGCTGAGATTAGACATACACTCCGCTTATCAGTGCAGACACTTCTGACAATGATGATGGAACTTGACACAATTAAGAAAGAAGCAGATAAGAAAGGTCGGACTTCCCGATCAGATGGATCCCGAACACCTGTTTTGGAAATTGTCATAAATGAATTATCTTACAACAAGGAGTTGATTGGTCCATTTCTTCAGGCATTGACAGAACCCAAGTGGAAAATGGACATTATTTTGACCTATCTTTTGAAGTATTTCTCACGGTATATCACTAAGAATGTGGGAAGTGATATTAAAGCAACTGCCATACAAGATATCTTCAATTTCTTTTCAGATGTAACAAATGCAAGGAACATTGTCAAAAGAATAGGTGCAGATTTACTTCAGTTGCTTTTGGTGCATGGGTTTCAGGCATATTTTTCACTACGAAAGGGCTCTGATTTTATGAACAGTAGTGGAGAAGATGTGTTACTCAAAGAAACCTGTAAATCGTTCATAGCCACTTTCCAAAATCTCCAAAGTGTATATAGGAATTTTGAACTCGTCGCAGTAGGAAGAGATGCATTATTCACTGCAGCAACAATTTTGTCATGA___AATTAATTTAAATTCATATTTTATAACTTTGTGAGAGCTGGATGTGAATCCTGGATTTTGTATATACTTTCTGTAATGCTTACAAAGTTGAAAAACGTCCATGCCCCATGTTTATTCTACGGTGACATCGTTATGATGCATTTATTGTTCAATGAAACAATTCAATTAACATTGTGGGAAAATGCCCTTAGTAAACTGTGATCTTTGTTACTGTCTCCTCAAAATGTGGATTGGTTTTAACATTTTACTTTTGCATTACAAACATTTCCATGCGCAAAT

Fln Alignment:

sp_v1.1_unigene3148___KNLVISSLHIMAATDKEPFDNNDKGHRADGIFKKSLQDLDSASYLAEAEIRHTLRLSVQTLLTMMMELDTIKKEADKKGRTSRSDGSRTPVLEIVINELSYNKELIGPFLQALTEPKWKMDIILTYLLKYFSRYITKNVGSDIKATAIQDIFNFFSDVTNARNIVKRIGADLLQLLLVHGFQAYFSLRKGSDFMNSSGEDVLLKETCKSFIATFQNLQSVYRNFELVAVGRDALFTAATILS
A9NUM3______________KNLVISSLHIMAAKAKETFDDNHKGHSADAILKKKLQDLDRASYLAEAEIRYTLCLSVQGLLTMMAELDTIKKGADKKGRTSRSDGSRTPVLEIVIDELSYNKELIGPFLQALTEPKWKMDIILTYLLKYFSRYITKNVGSDIEATTIQDIFNFFSDVTNARSITRRISADLLQLVLVHGFQAYFSLRKGSDFMNSCEQKVLLKETCKSFIATFQNLQSVYKNFELVAVGRDALFTAATILS

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
151			25	75	0.996473
152	75		25		0.996473
385		11		88	0.923564
387	88			11	0.923564
388	88	11			0.923564
392		11		88	0.923564
393		11		88	0.923564
397		88	11		0.923564
398	88		11		0.923564
400			88	11	0.923564
403	88	11			0.923564
404	11			88	0.923564
405	88	11			0.923564
437	90		10		0.90298
438	90			10	0.90298
444	90			10	0.90298
446	90		10		0.90298
447		90	10		0.90298
448	90	10			0.90298
449	90			10	0.90298
451	90			10	0.90298
452		10		90	0.90298
457		10		90	0.90298
573	15			84	0.999986
576		15	84		0.999986
578	15			84	0.999986
702		31		68	1.0
725			78	7	0.999974
726			21	71	1.0
834			83	16	0.994512
836		80	20		0.995493
843			20	80	0.995493
846			20	80	0.995493
848		80	20		0.995493
852	25		75		0.996473
856	75	25			0.996473
859		33		66	0.997452
860		66		33	0.997452
862	33			66	0.997452
863			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain