SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3133

Length: 3433 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene3133
ATGGGGAGCGAAGAAACGACGAATGGGCAAGCAGTTGGTGGAGATGCAGGAACTTTAGGGTCGGCTGCGCTAATCTCGGCCGTCCGTCTCGCTTCTGCGTGGCATTAAATTCCAGGGCATGTGATGGAGTGGCCGCTGGAGAATTCTAGGCCTTTTCAAGGTCCCCCAATATGGATGTCATCAATGGGAGTTTCTCAATCAGAGGAAAGGGATAGTAATGGTTTCCAATATAAATTGAATGGTTTTCATGGCTCTAGTGATGCTAGTTTGTTTTCAAGATCATTGCCTGTCACATTCCATGACAAATTGACTGTAGCAGATGAGGAATATGGTGGGAAAGCTGTTATGAGAGCATCTTATTCAAGGCGATTACAGGAAGAAGAACTTCTGCAATCTCCTGAGACTATAGAACCCAATACTATTGGTACTGTTCTGCCTGATGATGAAGAAGAACTTTTGGCTGGCATCATGGATGATTTAGACTTGAATGGATTGTCCAGCCAAGCTGAAGAATCAGAAGAGTATGATCTATTTAGCAGTGGAGGTGGGATTGAATTGGATTCTGATTCTCAAGTTCCAAATGCACACTTGGCCAAGGCAAGAATATCAGACAGTACAGGGGTTGGTATGGTTCATCATAGTATTTCAAATGGGTCTGGAACTATTGCAGGAGAGCATCCTTATGGTGAGCATCCATCTAGAACATTATTTGTGAGAAATATTAATAGTAACGTGGAGGATTTTGAGCTCCGTGCTTTATTTGAGCAACATGGTGATATCAGGACTCTTTACACTGCATGTAAGCATCGTGGTTTTGTTATGATATCTTATTATGATATTCGTGCTGCTCGAAGTGCAATGCGAGCTTTACAAAACAAACCACTACGCCGACGCAAACTTGATATTCATTTTTCAATTCCAAAGGACAATCCTTCAGATAAGGATGTAAATCAAGGAACACTTGTTGTGTTTAATCTTGATCCCTCTGTAACAAACGATGATCTCCGTGTGATTTTTGGTGCTTACGGAGAAGTCAAAGAGATAAGAGAGACACCACACAAACGACACCACAAATTTATTGAATTCTATGATGTGAGAGCTGCTGATTCAGCCCTTCGTGCTTTAAACCGTAGTGATATTGCTGGGAAGCGCATTAAGCTTGAACCGAGTCGCCCTGGAGGAACACGACGGAGTGTGCTTCCAATGCTTGGGAACTGCTCAACTATAACAAAACAGGTGGGCATGGATCTGGAGCGTGATGAAATTAACAATTATCGGCAACAAGTTGGCTTCTCGCCAATTAATTCACCTTCAGGTCCTTGGGCACATTTTAGCTATCCCAGTGACACTGGTTCTCTCCGAAGTTTGGAGCCTTCACCTGGCAGTGGAGCTAACAAACCTGTACCGGCATTGGCTAGAAGCATTCCACCTGTGGTATCCCCTTTGTCCAAATTTGGAAGTACTAGCAATGGGATGAGGCAGCCTAGTTACACTGATCCAGTGTCATTCATAAACAGTATGGAAAAGATTGGCCATCTTCACGATTCACATTCTTTACCAGAACAAAATACACGGATCATGCAGTTAATGCATTATAACAGAGGAACTGTACCAGTACTGAGAAGTTCCACTCCCATTGGACGACATGAAGAAATGGATATTTCCAGCAATTCAGCATATGATCAGGCAAACAAAAGCTCTGGTGGAAGTTGTGATTTGGCAGGTTCTCAGCGTTTGTGGGGCAGTCCAAGTCCTTACGCTCATCATATACAGAATCCTGGATGGCGTACACCATGTCTTGGTCATTCATTTGATTTAACTAGTTACGCTTATCCCCATGGCTATCTGTATTCTGGAGGACAGGGATCTAATGGAAATTCTGTTCCAATACCACTTCATAATTATCATGCTGGATCTGCTCCCTCAGGGAATCGGTCTATAGAAGGTCAGCTTGGTTATCTAACAGAGTCACCTACTACATCTTATGTATATCCTAGAGCATGTGGCACCATGAGCTTAAGTTCTGCAAGTGAAAACCGTTTGATAAATTCTGGAATGCATGGTGTTCTAAATGGCTGTTCTCCTCTTGCAACACATGTAAGTCTTGAAAGTGGGTCTCAAAGTTTTGGATCCATGCCTTCACAGTCCAGAGTCAACATGTTTGCAGAATGTGGGTTTTTAGGATCAATATCCAGCAATGGAGAAGATTTAAATGAACAAGGAAGAAGTGGGAGTGGCAGCAATTACATGAATCAAGTAGAAAACAAGAAGCAGTTTCAACTTGATGTAGATAAAATTTCCCGGGGTGAAGATACCCGAACAACACTTATGATAAAGAATATTCCAAATAAGTACACTTCTAAGATGCTACTGGCAGCTATTGATGAACAACACGGAGGCACTTATGATTTCCTTTACCTGCCAATTGATTTTAAGAATAAATGCAATGTGGGCTATGCTTTTATAAATATGACATCTCCATCTCATATCATCCATTTCTATCAGGGATTCAATGGAAAGAAATGGGAGAAGTTCAACAGTGAAAAGGTTGCTTCTCTTGCATATGCTCGAATACAAGGAAAAGCTGCTCTTGTGGCACATTTTCAAAATTCTAGCTTGATGAATGAGGATAAGCGTTGCCGTCCTATTCTATTTTACTCTGAGGATCAGGAGGCTAGTGATCAGGAGCCATTTCCTTCAGGAATCAATACCAGGTTTCAGCCATCAAAATGTTCAGGTGGCACTGATCTCCTTGAAAGTCCAACTCGGAGTGGGATAAAGGGTGATACTGTAATTGGAAATGTGGAAGCTACTACCCTTGGTAATTCTCAATCATCTGTAAAGTAATGATTTTTATATTAACATGTAAAGTAGGCTAAGAAATTTCCTGGTCTCAATGTAACCAAACAATGTATAAAAGAAGAGTGCCTCTCAGGTTAGAGGCTTGTCATCAAGTGTATATTTCGACCATTTTTCTGGTTCCACTTTGGTGGCCATCTTCTTAAGCTATGTATATCATAAACTTCATTCAAAGAGGGGTCACATTTCATTTCATCAAGCTTATGTGAGGCATTCATTGTATGAGACAGTGACAACTCATTATTGTCGCAAAATACTGTAAACTGATAGCTTGAAGGATTTGTGAAAAGATAGGTTCTTCTTCTCAATATAGCTGAGGAAATATTAAACTGAACTGAAGAACTAAGGTGGTTCATTTTTGAGCATATTGCAGGATTATTTAGGCATGTAAACTGTTGTAGTACATATATTTGACTGGATATTAGGCTCCATCTTTTCTTGTGGCAACAGATGGACTATCCAGCTTCGACCTATTTATATTTGTCACATACACTGAATTTCCAAATCCATATCAGTTACCATTAACTTCTGTTCAATAATAATAGGTGGGTTGGTTTCACCTCCCGTTTTGACC

Ace file of the UniGene sp_v1.1_unigene3133

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNA-binding protein, putative	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	59%
Blast2go	rna-binding region rnp-1 (rna recognition motif) rna recognition motif 2	-	-	62%

Source	InterPros	Term	Type	Identity
Blast2go	RNA recognition motif domain	IPR000504	-	62%
Blast2go	RNA recognition motif 2	IPR007201	-	62%
Blast2go	Nucleotide-binding, alpha-beta plait	IPR012677	-	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKG9

Fln msg:

Fln protein: MEWPLENSRPFQGPPIWMSSMGVSQSEERDSNGFQYKLNGFHGSSDASLFSRSLPVTFHDKLTVADEEYGGKAVMRASYSRRLQEEELLQSPETIEPNTIGTVLPDDEEELLAGIMDDLDLNGLSSQAEESEEYDLFSSGGGIELDSDSQVPNAHLAKARISDSTGVGMVHHSISNGSGTIAGEHPYGEHPSRTLFVRNINSNVEDFELRALFEQHGDIRTLYTACKHRGFVMISYYDIRAARSAMRALQNKPLRRRKLDIHFSIPKDNPSDKDVNQGTLVVFNLDPSVTNDDLRVIFGAYGEVKEIRETPHKRHHKFIEFYDVRAADSALRALNRSDIAGKRIKLEPSRPGGTRRSVLPMLGNCSTITKQVGMDLERDEINNYRQQVGFSPINSPSGPWAHFSYPSDTGSLRSLEPSPGSGANKPVPALARSIPPVVSPLSKFGSTSNGMRQPSYTDPVSFINSMEKIGHLHDSHSLPEQNTRIMQLMHYNRGTVPVLRSSTPIGRHEEMDISSNSAYDQANKSSGGSCDLAGSQRLWGSPSPYAHHIQNPGWRTPCLGHSFDLTSYAYPHGYLYSGGQGSNGNSVPIPLHNYHAGSAPSGNRSIEGQLGYLTESPTTSYVYPRACGTMSLSSASENRLINSGMHGVLNGCSPLATHVSLESGSQSFGSMPSQSRVNMFAECGFLGSISSNGEDLNEQGRSGSGSNYMNQVENKKQFQLDVDKISRGEDTRTTLMIKNIPNKYTSKMLLAAIDEQHGGTYDFLYLPIDFKNKCNVGYAFINMTSPSHIIHFYQGFNGKKWEKFNSEKVASLAYARIQGKAALVAHFQNSSLMNEDKRCRPILFYSEDQEASDQEPFPSGINTRFQPSKCSGGTDLLESPTRSGIKGDTVIGNVEATTLGNSQSSVK*

Protein Length: 909

Fln nts: ATGGGGAGCGAAGAAACGACGAATGGGCAAGCAGTTGGTGGAGATGCAGGAACTTTAGGGTCGGCTGCGCTAATCTCGGCCGTCCGTCTCGCTTCTGCGTGGCATTAAATTCCAGGGCATGTG_-_ATGGAGTGGCCGCTGGAGAATTCTAGGCCTTTTCAAGGTCCCCCAATATGGATGTCATCAATGGGAGTTTCTCAATCAGAGGAAAGGGATAGTAATGGTTTCCAATATAAATTGAATGGTTTTCATGGCTCTAGTGATGCTAGTTTGTTTTCAAGATCATTGCCTGTCACATTCCATGACAAATTGACTGTAGCAGATGAGGAATATGGTGGGAAAGCTGTTATGAGAGCATCTTATTCAAGGCGATTACAGGAAGAAGAACTTCTGCAATCTCCTGAGACTATAGAACCCAATACTATTGGTACTGTTCTGCCTGATGATGAAGAAGAACTTTTGGCTGGCATCATGGATGATTTAGACTTGAATGGATTGTCCAGCCAAGCTGAAGAATCAGAAGAGTATGATCTATTTAGCAGTGGAGGTGGGATTGAATTGGATTCTGATTCTCAAGTTCCAAATGCACACTTGGCCAAGGCAAGAATATCAGACAGTACAGGGGTTGGTATGGTTCATCATAGTATTTCAAATGGGTCTGGAACTATTGCAGGAGAGCATCCTTATGGTGAGCATCCATCTAGAACATTATTTGTGAGAAATATTAATAGTAACGTGGAGGATTTTGAGCTCCGTGCTTTATTTGAGCAACATGGTGATATCAGGACTCTTTACACTGCATGTAAGCATCGTGGTTTTGTTATGATATCTTATTATGATATTCGTGCTGCTCGAAGTGCAATGCGAGCTTTACAAAACAAACCACTACGCCGACGCAAACTTGATATTCATTTTTCAATTCCAAAGGACAATCCTTCAGATAAGGATGTAAATCAAGGAACACTTGTTGTGTTTAATCTTGATCCCTCTGTAACAAACGATGATCTCCGTGTGATTTTTGGTGCTTACGGAGAAGTCAAAGAGATAAGAGAGACACCACACAAACGACACCACAAATTTATTGAATTCTATGATGTGAGAGCTGCTGATTCAGCCCTTCGTGCTTTAAACCGTAGTGATATTGCTGGGAAGCGCATTAAGCTTGAACCGAGTCGCCCTGGAGGAACACGACGGAGTGTGCTTCCAATGCTTGGGAACTGCTCAACTATAACAAAACAGGTGGGCATGGATCTGGAGCGTGATGAAATTAACAATTATCGGCAACAAGTTGGCTTCTCGCCAATTAATTCACCTTCAGGTCCTTGGGCACATTTTAGCTATCCCAGTGACACTGGTTCTCTCCGAAGTTTGGAGCCTTCACCTGGCAGTGGAGCTAACAAACCTGTACCGGCATTGGCTAGAAGCATTCCACCTGTGGTATCCCCTTTGTCCAAATTTGGAAGTACTAGCAATGGGATGAGGCAGCCTAGTTACACTGATCCAGTGTCATTCATAAACAGTATGGAAAAGATTGGCCATCTTCACGATTCACATTCTTTACCAGAACAAAATACACGGATCATGCAGTTAATGCATTATAACAGAGGAACTGTACCAGTACTGAGAAGTTCCACTCCCATTGGACGACATGAAGAAATGGATATTTCCAGCAATTCAGCATATGATCAGGCAAACAAAAGCTCTGGTGGAAGTTGTGATTTGGCAGGTTCTCAGCGTTTGTGGGGCAGTCCAAGTCCTTACGCTCATCATATACAGAATCCTGGATGGCGTACACCATGTCTTGGTCATTCATTTGATTTAACTAGTTACGCTTATCCCCATGGCTATCTGTATTCTGGAGGACAGGGATCTAATGGAAATTCTGTTCCAATACCACTTCATAATTATCATGCTGGATCTGCTCCCTCAGGGAATCGGTCTATAGAAGGTCAGCTTGGTTATCTAACAGAGTCACCTACTACATCTTATGTATATCCTAGAGCATGTGGCACCATGAGCTTAAGTTCTGCAAGTGAAAACCGTTTGATAAATTCTGGAATGCATGGTGTTCTAAATGGCTGTTCTCCTCTTGCAACACATGTAAGTCTTGAAAGTGGGTCTCAAAGTTTTGGATCCATGCCTTCACAGTCCAGAGTCAACATGTTTGCAGAATGTGGGTTTTTAGGATCAATATCCAGCAATGGAGAAGATTTAAATGAACAAGGAAGAAGTGGGAGTGGCAGCAATTACATGAATCAAGTAGAAAACAAGAAGCAGTTTCAACTTGATGTAGATAAAATTTCCCGGGGTGAAGATACCCGAACAACACTTATGATAAAGAATATTCCAAATAAGTACACTTCTAAGATGCTACTGGCAGCTATTGATGAACAACACGGAGGCACTTATGATTTCCTTTACCTGCCAATTGATTTTAAGAATAAATGCAATGTGGGCTATGCTTTTATAAATATGACATCTCCATCTCATATCATCCATTTCTATCAGGGATTCAATGGAAAGAAATGGGAGAAGTTCAACAGTGAAAAGGTTGCTTCTCTTGCATATGCTCGAATACAAGGAAAAGCTGCTCTTGTGGCACATTTTCAAAATTCTAGCTTGATGAATGAGGATAAGCGTTGCCGTCCTATTCTATTTTACTCTGAGGATCAGGAGGCTAGTGATCAGGAGCCATTTCCTTCAGGAATCAATACCAGGTTTCAGCCATCAAAATGTTCAGGTGGCACTGATCTCCTTGAAAGTCCAACTCGGAGTGGGATAAAGGGTGATACTGTAATTGGAAATGTGGAAGCTACTACCCTTGGTAATTCTCAATCATCTGTAAAGTAA___TGATTTTTATATTAACATGTAAAGTAGGCTAAGAAATTTCCTGGTCTCAATGTAACCAAACAATGTATAAAAGAAGAGTGCCTCTCAGGTTAGAGGCTTGTCATCAAGTGTATATTTCGACCATTTTTCTGGTTCCACTTTGGTGGCCATCTTCTTAAGCTATGTATATCATAAACTTCATTCAAAGAGGGGTCACATTTCATTTCATCAAGCTTATGTGAGGCATTCATTGTATGAGACAGTGACAACTCATTATTGTCGCAAAATACTGTAAACTGATAGCTTGAAGGATTTGTGAAAAGATAGGTTCTTCTTCTCAATATAGCTGAGGAAATATTAAACTGAACTGAAGAACTAAGGTGGTTCATTTTTGAGCATATTGCAGGATTATTTAGGCATGTAAACTGTTGTAGTACATATATTTGACTGGATATTAGGCTCCATCTTTTCTTGTGGCAACAGATGGACTATCCAGCTTCGACCTATTTATATTTGTCACATACACTGAATTTCCAAATCCATATCAGTTACCATTAACTTCTGTTCAATAATAATAGGTGGGTTGGTTTCACCTCCCGTTTTGACC

Fln Alignment:

sp_v1.1_unigene3133___LENSRPFQGPPIWMSSMGVSQSEERDSNGFQYKLNGFHGSSDASLFSRSLPVTFHDKLTVADEEYGGKAVMRASYSRRL--QEEELLQSPETIEPNTIGTVLPDDEEELLAGIMDDLDLNGLSSQAEESEEYDLFSSGGGIELDSDSQVPNAHLAKARISDST-GVGMVHHSISNGSGTIAGEHPYGEHPSRTLFVRNINSNVEDFELRALFEQHGDIRTLYTACKHRGFVMISYYDIRAARSAMRALQNKPLRRRKLDIHFSIPKDNPSDKDVNQGTLVVFNLDPSVTNDDLRVIFGAYGEVKEIRETPHKRHHKFIEFYDVRAADSALRALNRSDIAGKRIKLEPSRPGGTRRSVLPMLGNCSTITKQVGMDLERDEINNYRQQVGFSPINSPSGPWAHFSYPSDTGSLRSLEPSPGSG-----ANKPVPALARSIPPVVSPLSKFGSTSNGMRQPSYTDPVSFINSMEKIGHLHDSHSLPEQNTRIMQLMHYN-RGTVPVLRSSTPIGRHEEMDISSNSAYDQANKSSGGSCDLAGSQRLWGSPSPYAHHIQNPGWRTPCLGHSFDLTSYAYPHGYLYSGGQGSNGNSVPIPLHNYHAGSAPSGNRSIEGQLGYLTESPTTSYVYPRACGTMSLSSASENRLINSGMHGVLN-GCSPLATHVSLESGSQSFGSMPSQSRVNMFAECGFLGSISSNGEDLNEQGRSGSGSNYMNQVENKKQFQLDVDKISRGEDTRTTLMIKNIPNKYTSKMLLAAIDEQHGGTYDFLYLPIDFKNKCNVGYAFINMTSPSHIIHFYQGFNGKKWEKFNSEKVASLAYARIQGKAALVAHFQNSSLMNEDKRCRPILFYSEDQEASDQEPFPSGINTRFQPSKCSGGTDLLESPTRSGIKGDTV
B8LKG9______________VDPSKHFQGPPMWSPTIQIPQTKEEGTH-IAARLDVFHVSSDRSLFSSSLPVLFHGKLNLSDKGCSGTLMEAASCHSKKPDQGEDSFESFQGMESQAIGYCLPDDEEELLAGIMDDFDKSGLFSQTEELEEYDLFSSGGGMELDSDSQESLNVKNNNAISDYTAGGGTGHPGVSNVPVTIVGEHPYGEHPSRTLFVRNINSNVEDSELRTYFEHYGDIRTLYTACKHRGFVMISYYDIRAARNAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNDDLRRIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEEALRALNKSDIAGKRIKLEPSRPGGARRSLM----------QHLSQELEQD--------VGSPFMNSPPGPWEYFSSPSENGSLQSITYSRGFGNMNHPVNKPLPGFGASLPPF--PSTKSGIVSNDLGRAKQIEQVPSINSFGKSGQLHQSHSFPDYDSGMMPVMHYNSAGAVPVPRSSTPFGHHEGIGTASSGSFGHLSSSSGVNGTLSGHQYLWGSPSPYSHHITWPG---PPLGHSVN-ASGSQP----YSGRQSPYVSSAIAPHH--HVGSAPSGEPSLDRHFSYLTETSDMPFVNPSSLGSMSCSNGSP--VISIGAHGVLNAGGVAISNNSNIECGS-PIGVLSPQRKSRMFSSGGFTGSIANFSEGLNERGRSRRGDNSTSQADNKKQYQLDLDKIMRGEDARTTIMIKNIPNKYTSKMLLATIDEHHRGTYDFLYLPIDFKNKCNVGYAFINMTSPSHIIPFYQAFNGKKWEKFNSEKVASLAYARIQGKTALIAHFQNSSLMNEDKRCRPILFQPGAAGTGDQETFPMGPDVKVHPSENLADGNARESPTIAN-KDDSV

SNPs (tot: 66)

Position	A %	C %	G %	T %	Probability
645	20		80		0.995493
853		33		66	1.0
880		85		14	0.993533
892		57		42	1.0
1160		20		80	0.995493
1242		20	80		0.995493
1259	25		75		0.996473
1278		25		75	0.996473
1283			75	25	0.996473
1302		75		25	0.996473
1378	25	75			1.0
1517	77		22		0.999999
1648	25		75		0.996473
1698		33		66	1.0
1742	33			66	0.997452
1866	80		20		0.995493
2027		16		83	0.994512
2050			16	83	0.994512
2054		16		83	0.994512
2055	83	16			0.994512
2056	83			16	0.994512
2057	83			16	0.994512
2058			16	83	0.994512
2059			16	83	0.994512
2063			83	16	0.994512
2064	83	16			0.994512
2066		16		83	0.994512
2067			83	16	0.994512
2107			83	16	0.994512
2162	14			85	0.993533
2163		85		14	0.993533
2164	85		14		0.993533
2165	85		14		0.993533
2166		85	14		0.993533
2233	83			16	0.994512
2235	83		16		0.994512
2236	83		16		0.994512
2420	20			80	0.995493
2497	88		11		0.923564
2501		11		88	0.923564
2502		88		11	0.923564
2633	90	10			0.90298
2634		10		90	0.90298
2635			90	10	0.90298
2636	90			10	0.90298
2639	90	10			0.90298
2642	90		10		0.90298
2643			90	10	0.90298
2645	10		90		0.90298
2646		10		90	0.90298
2650	10	90			0.90298
2736	83		16		0.999991
3053	93		6		0.999364
3055			6	93	0.999364
3057		90	10		1.0
3059		6		93	0.999364
3062		93	6		0.999364
3063	93		6		0.999264
3065		93	6		0.999264
3066	90			6	0.997544
3067	93	6			0.999264
3068	6		93		0.999264
3071		6		93	0.999264
3229			84	15	1.0
3403	20	80			0.995493
3406		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain