SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3105

Length: 1277 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene3105 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase family protein; K04424 sterile alpha motif and leucine zipper containing kinase AZK [EC:2.7.11.25]	-	-	61%
FL-Next	sp=Serine/threonine-protein kinase CTR1; Arabidopsis thaliana (Mouse-ear cress).	-	-	32%
Blast2go	kinase family protein	-	-	73%

Source	ECs	Term	Type	e value	Identity
AutoFact	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	0.0	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	kinase activity	GO:0016301	Molecular Function	0.0	73%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q05609

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 190 aas, your sequence is shorter than subject: 282 - 821

Fln protein: SPATSPVEFLAHRYWSYNVIDYDEKVMDGFYDVYGILSDPNSQGMMPSLVDLKRTVVSDNVGYEVVLVNRVIDPVLQHLEQKVLGIALECGAAERGPLDSGLLQMIADLVAENMGGPVTDADDMLTRWTICSYKLRTTLNNIVLPLGHLQIGLSRHRALLFKILADCVGIPCRVVKGSHYTGTDDGAVNMIKLDNEREFIIDLMGAPGTLIPTETPSVASVQNPVIDNLGTGQHILAQAVQDLCSTLEDQDTQGSADRKETAVVCINDYGGDYGREDKNKF*

Protein Length: 283

Fln nts: TTCCCCTGCCACCTCACCTGTTGAGTTCCTTGCTCATCGTTATTGGAGCTACAATGTCATTGACTACGATGAGAAAGTGATGGATGGATTCTATGATGTTTATGGCATTTTATCGGATCCTAATTCACAAGGGATGATGCCTTCTCTAGTTGATCTTAAACGAACAGTTGTCTCAGATAATGTTGGATACGAAGTTGTTTTGGTCAATAGAGTCATAGATCCTGTACTACAACATCTAGAACAAAAGGTGCTTGGTATTGCATTAGAGTGTGGAGCTGCTGAGCGTGGTCCATTGGATAGTGGCTTATTACAAATGATTGCAGATCTTGTTGCAGAAAACATGGGCGGCCCTGTTACTGATGCTGATGATATGCTGACAAGGTGGACAATATGTAGTTATAAACTGCGTACCACTTTGAATAATATCGTTTTACCTCTTGGCCACTTGCAGATTGGGCTGTCACGCCACCGGGCCCTGCTTTTCAAGATATTGGCAGACTGTGTGGGCATTCCTTGTAGGGTAGTAAAAGGAAGTCACTACACTGGGACTGATGACGGAGCAGTTAACATGATTAAACTAGATAATGAAAGGGAATTTATCATTGATCTGATGGGAGCTCCTGGTACTCTGATTCCAACTGAAACACCTAGTGTAGCTTCTGTTCAGAATCCTGTAATTGATAACTTGGGCACAGGACAGCATATTCTTGCACAAGCAGTGCAGGATTTGTGCTCAACTCTTGAAGATCAGGATACCCAAGGTTCTGCAGACAGAAAAGAAACAGCAGTTGTCTGCATTAATGACTATGGTGGTGACTATGGAAGGGAAGACAAGAATAAATTTTGACTCAGCCACATGTAATGCTTATAAGTCGAGCATGAATGATGTCAAAATCAAAGATGGGTATCAGTTTGAATCCTTTGAACCAGGATTCGGAAAATTGAATCTGCCATCAAACCAGCCAAGGAGATCTCCATCATGGACAGAGGGAGCAGTATCTGTTGCTGAGAAGAGGAAAGTGAAAAATGTATCACAGTATGTGATGAATGCTGCTTCAGAAAATCCCGAGTTTGCACAAAGATTACATGCTGTTTTATTGGAGAGTGGTGTTCCAGCTCCTCCACATTTATTTGATGGCATCAGTTCACAAGAAGGTGCAGCAGAACAGAATGTTACCCAACAAAAGAATATGATTGAGGAGAGAGAAATTAACGACTTTTTAAAACGGCAAGATAAAATTTTCTCAGGCCCTGGACGACCTCCAAAACACATTTCA

Fln Alignment:

sp_v1.1_unigene3105___SPVEFLAHRYWSYNVIDYDEKVMDGFYDVYGI-------LSDPNSQGMMPSLVDLKRTVVSDNVGYEVVLVNRVIDPVLQHLEQKVLGIALECGAAERGPLDSGLLQMIADLVAENMGGPVT-DADDMLTRWTICSYKLRTTLNNIVLPLGHLQIGLSRHRALLFKILADCVGIPCRVVKGSHYTGTDDGAVNMIKLDNEREFIIDLMGAPGTLIPTET----PSVASVQNPV
Q05609______________SSAETVSHRFWVNGCLSYYDKVPDGFYMMNGLDPYIWTLCIDLHESGRIPSIESLRAVDSGVDSSLEAIIVDRRSDPAFKELHNRVHDISCSCITTKE------VVDQLAKLICNRMGGPVIMGEDELVPMWKECIDGLKEIFK-VVVPIGSLSVGLCRHRALLFKVLADIIDLPCRIAKGCKYCNRDDAASCLVRFGLDREYLVDLVGKPGHLWEPDSLLNGPSSISISSPL

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
693		14		85	0.993533
694	14			85	0.993533
799		10	90		0.90298
800	90	10			0.90298
801	90	10			0.90298
803	90			10	0.90298
831			22	77	0.999999
832		77	22		0.999999
837	77	22			0.999999
839	22			77	0.999999
840		22	77		0.999999

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain