SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3088

Length: 2954 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene3088
CGTCGTGACCTTGGCTGTCACTCAATTCGATGCGTAAGGTTCCGGGTTCGAAACTCGTCTCCGCCAGGTGTTCGACAAAAATCTTGCAGTGAACCTGTTGCGTAACCATCGGAGTCCGTGCTTGACCGCTGGTGTTGCAGATTTAGAAGAACAAGAGGAAGAGAATCGTTCAAAACGACCGACGCGGAGGAGGAAGAAGCGGTGGACGGTAAATTTCCTCGACAGAAAGACATTCATCTTGGATTGCCTTTTGCTCAGTCCAATCTGTGGCTGCCTCTGTTTACGAACTTTGCGGCCCGTGATTTTCTCCTACCGATGCGATTTAGCTCTGAGATAGATCTTTCTGGCCCTGCCCTGCTCGAGATCTGTGTCTGCTCGAGATCTGTGTCTTGGAAGCGTTTCGAGCTTCGGACGCTGGCCTGTTCGATGAGCTTTGAGATTTATGCGTAAAAGGAAACGGTACAGACGCTGGAGATAATGAACAGGGGATTTTCTCAGCACGCTGACTGAGGACAAAAGGTTAAAGTCCCGTACGTGCCAAAGTTGTCGGCCATGTCTTCTCTTAGCAGAGAACTCGTGTTTCTCATTCTCCAGTTTCTAGATGAGGAAAAGTTTAAGGAAACGGTCCACAAGCTCGAGCAGGAATCGGGCTTTTTCTTCAATATGAAGTATTTTGAGGACCAGGTCGTCGGTGGAGAGTGGGAAGAGGTCGAGAGATACCTTTCTGGTTTTACGAAAGTTGATGACAATCGATACTCCATGAAGATATTTTTTGAAATCAGGAAGCAGAAATATTTAGAGGCATTGGACAAGGCAGACCGAGCCAAAGCTGTAGAAATACTAGTAAAGGACCTAAAAGTGTTTGCTTCCTTCAATGAGGAGCTGTATAAGGAGATAACGCAACTTCTGACTTTAGATAATTTCAGAGAAAATGAACAGCTTTCAAAGTACGGGGATACCAAATCAGCTAGGAACATTATGTTATTGGAATTAAAAAAGCTTATAGAAGCTAATCCTCTGTTCCGAGAAAAGTTACAGTTTCCTGCACTTAAAGCATCTCGATTGCGGACGCTTATCAATCAAAGTCTGAATTGGCAGCATCAGCTCTGCAAAAATCCAAGGCCTAACCCCGATATAAAAACCCTTTTTGTTGATCATAATTGTGGACAACAAAATGGAGCACGTCCTCCACAGCCTGCAAACAATTTTATGGGAGCATTTGCCAAACCAACTCCTTTCCCTCCTGTACCTACTCATACACCATTCCAACCACCATCTACAAATCCTCCAAGTGCCCTTGCAGGTTGGATGGCTAATCCTGCCCCTGTGCCTCATACTTCACTCTCTGCAGGCCCTGTAGGGCTTAGTTCGGCAACAAGTCCAGCTGCTATGGTGAAGCGTCCGAGGACCCCTCCAGTCAACACCCCACCAGTAGATTACCAGTCTGCAGATTCTGAACATCTCTTGAAAAGATCAAGGCCAGTTGGTCAGCCAGGCGAGGAGGTTAGCTATCATGGGACAAATCATCTTCAGTGCCTGTATTCGCAAGATGACCTTCCAAAGACTGTGGCTCAAACTTTAAACCAGGGTTCTTCCATAATGAGCATGGATTTTCACCCTCTGCAGCACACTGTACTCTTAGTGGGTACAATTGTGGGTGATATAGCTATATGGGAAGTGGGTGCACGGGAAAAGCTGGCCATCAGAAATTTCAAGGTTTGGGATCTTGCAGGCTGCACTGCCTCGATGCAGGCAGCACTTGTTAAGGAACCGGGTGTCTCTGTCAACCGTGTTGTGTGGAGTCCAGATGGCAATTTGTTTGGGGTTGCCTATTCAAAGCACATAGTGCATACTTACACCTATAATGGTGGTGGAGATGTACGACAGCACTTGGAGATTGATGCGCATATTGGAGGTGTCAATGACCTTTCTTTCTCAAATCCTAGCAAACAGCTGTGCATCATTACGTGTGGGGATGACAAGATAATCAAGGTATGGGATGCAATCACTGGCCGCAGGTTGTATACTTTTGAAGGTCATGAAGCACCTGTGTATTCAATATGCCCTCATCATAAAGAAACATTCAGTTTATCTTTTCAACAGCCATTGATGGAAAAATAAAGGCTTGGTTATATGATCATATGGGCTCAAGGGTTGATTATGATGCACCTGGACATTGGTGCACCACTATGGCCTACAGTGCCGATGGAACAAGACTGTTCTCCTGTGGAACTAGCAAGGAGGGAGAATCATTTCTTGTTGAATGGAATGAAAGTGAGGGAGCAATTAAACGGACATATCAAGGATTCCGTAAACGCTCTATGGGTGTTGTACAATTTGACACCACACGAAACCGCTTTTTGGCTGCTGGAGATGAATTTGTGATCAAGTTTTGGGACATGGACAACACTAACCTGTTGACTACAGTTGAGGGTGATGGGGGATTACCGGCTAGCCCCCGCCTCCGGTTCAATAAGGATGGATCCTTGCTAGCTGTTTCAACTAGTGACAATGGTATCAAGATCCTAGCCAATGCTGATGGGCTGCGATTGCTACAAAGATATGAGAACCGCTCTCTTGATTCATCAAGGGTTCCTCCTGACACTGCGTCGAAGGTGGCTCCAGGGAATGCACTTGCAATCGTTAATGCAACTGCAGGGTCGACAACTGTGGGAGCAGAAAGGGGTAGTGCTTCAGTTTCCATCTCTGGACTTAATGGAGACACTAGGAGTATTGGGGATGTTAAAGTCAGGGTGACAGAAGAATCAATAGAGAAGAACAAGGGCTGGAAGTTGACTGAAATAGCTGAACCTTCTCAGTGCCGGTCACTAAAACTTCCTGATAACTTACCAGCGAGCAAGATTTCAAGATTGATATATACTAATTCAGGAGTTGCAATTCTTGCTTTGGCTTCCAATGCTGTTCACAAGCTTTGGAAATGGCAGCGTAATGAG

Ace file of the UniGene sp_v1.1_unigene3088 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta transducin-like protein, putative n=1 Tax=Solanum bulbocastanum RepID=Q7XA22_SOLBU	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	tpl protein binding protein homodimerization transcription repressor	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	primary shoot apical meristem specification	GO:0010072	Biological Process	78%
Blast2go	jasmonic acid mediated signaling pathway	GO:0009867	Biological Process	78%
Blast2go	xylem and phloem pattern formation	GO:0010051	Biological Process	78%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	78%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	78%
Blast2go	transcription repressor activity	GO:0016564	Molecular Function	78%
Blast2go	nucleus	GO:0005634	Cellular Component	78%
Blast2go	cytosol	GO:0005829	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	WD40 repeat-like-containing domain	IPR011046	-	0.0	78%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	0.0	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV83

Fln msg: your sequence is longer than subject: 523 - 300

Fln protein: MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDQVVGGEWEEVERYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKADRAKAVEILVKDLKVFASFNEELYKEITQLLTLDNFRENEQLSKYGDTKSARNIMLLELKKLIEANPLFREKLQFPALKASRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHNCGQQNGARPPQPANNFMGAFAKPTPFPPVPTHTPFQPPSTNPPSALAGWMANPAPVPHTSLSAGPVGLSSATSPAAMVKRPRTPPVNTPPVDYQSADSEHLLKRSRPVGQPGEEVSYHGTNHLQCLYSQDDLPKTVAQTLNQGSSIMSMDFHPLQHTVLLVGTIVGDIAIWEVGAREKLAIRNFKVWDLAGCTASMQAALVKEPGVSVNRVVWSPDGNLFGVAYSKHIVHTYTYNGGGDVRQHLEIDAHIGGVNDLSFSNPSKQLCIITCGDDKIIKVWDAITGRRLYTFEGHEAPVYSICPHHKETFSLSFQQPLMEK*

Protein Length: 524

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCGATGCGTAAGGTTCCGGGTTCGAAACTCGTCTCCGCCAGGTGTTCGACAAAAATCTTGCAGTGAACCTGTTGCGTAACCATCGGAGTCCGTGCTTGACCGCTGGTGTTGCAGATTTAGAAGAACAAGAGGAAGAGAATCGTTCAAAACGACCGACGCGGAGGAGGAAGAAGCGGTGGACGGTAAATTTCCTCGACAGAAAGACATTCATCTTGGATTGCCTTTTGCTCAGTCCAATCTGTGGCTGCCTCTGTTTACGAACTTTGCGGCCCGTGATTTTCTCCTACCGATGCGATTTAGCTCTGAGATAGATCTTTCTGGCCCTGCCCTGCTCGAGATCTGTGTCTGCTCGAGATCTGTGTCTTGGAAGCGTTTCGAGCTTCGGACGCTGGCCTGTTCGATGAGCTTTGAGATTTATGCGTAAAAGGAAACGGTACAGACGCTGGAGATAATGAACAGGGGATTTTCTCAGCACGCTGACTGAGGACAAAAGGTTAAAGTCCCGTACGTGCCAAAGTTGTCGGCC_-_ATGTCTTCTCTTAGCAGAGAACTCGTGTTTCTCATTCTCCAGTTTCTAGATGAGGAAAAGTTTAAGGAAACGGTCCACAAGCTCGAGCAGGAATCGGGCTTTTTCTTCAATATGAAGTATTTTGAGGACCAGGTCGTCGGTGGAGAGTGGGAAGAGGTCGAGAGATACCTTTCTGGTTTTACGAAAGTTGATGACAATCGATACTCCATGAAGATATTTTTTGAAATCAGGAAGCAGAAATATTTAGAGGCATTGGACAAGGCAGACCGAGCCAAAGCTGTAGAAATACTAGTAAAGGACCTAAAAGTGTTTGCTTCCTTCAATGAGGAGCTGTATAAGGAGATAACGCAACTTCTGACTTTAGATAATTTCAGAGAAAATGAACAGCTTTCAAAGTACGGGGATACCAAATCAGCTAGGAACATTATGTTATTGGAATTAAAAAAGCTTATAGAAGCTAATCCTCTGTTCCGAGAAAAGTTACAGTTTCCTGCACTTAAAGCATCTCGATTGCGGACGCTTATCAATCAAAGTCTGAATTGGCAGCATCAGCTCTGCAAAAATCCAAGGCCTAACCCCGATATAAAAACCCTTTTTGTTGATCATAATTGTGGACAACAAAATGGAGCACGTCCTCCACAGCCTGCAAACAATTTTATGGGAGCATTTGCCAAACCAACTCCTTTCCCTCCTGTACCTACTCATACACCATTCCAACCACCATCTACAAATCCTCCAAGTGCCCTTGCAGGTTGGATGGCTAATCCTGCCCCTGTGCCTCATACTTCACTCTCTGCAGGCCCTGTAGGGCTTAGTTCGGCAACAAGTCCAGCTGCTATGGTGAAGCGTCCGAGGACCCCTCCAGTCAACACCCCACCAGTAGATTACCAGTCTGCAGATTCTGAACATCTCTTGAAAAGATCAAGGCCAGTTGGTCAGCCAGGCGAGGAGGTTAGCTATCATGGGACAAATCATCTTCAGTGCCTGTATTCGCAAGATGACCTTCCAAAGACTGTGGCTCAAACTTTAAACCAGGGTTCTTCCATAATGAGCATGGATTTTCACCCTCTGCAGCACACTGTACTCTTAGTGGGTACAATTGTGGGTGATATAGCTATATGGGAAGTGGGTGCACGGGAAAAGCTGGCCATCAGAAATTTCAAGGTTTGGGATCTTGCAGGCTGCACTGCCTCGATGCAGGCAGCACTTGTTAAGGAACCGGGTGTCTCTGTCAACCGTGTTGTGTGGAGTCCAGATGGCAATTTGTTTGGGGTTGCCTATTCAAAGCACATAGTGCATACTTACACCTATAATGGTGGTGGAGATGTACGACAGCACTTGGAGATTGATGCGCATATTGGAGGTGTCAATGACCTTTCTTTCTCAAATCCTAGCAAACAGCTGTGCATCATTACGTGTGGGGATGACAAGATAATCAAGGTATGGGATGCAATCACTGGCCGCAGGTTGTATACTTTTGAAGGTCATGAAGCACCTGTGTATTCAATATGCCCTCATCATAAAGAAACATTCAGTTTATCTTTTCAACAGCCATTGATGGAAAAATAA___AGGCTTGGTTATATGATCATATGGGCTCAAGGGTTGATTATGATGCACCTGGACATTGGTGCACCACTATGGCCTACAGTGCCGATGGAACAAGACTGTTCTCCTGTGGAACTAGCAAGGAGGGAGAATCATTTCTTGTTGAATGGAATGAAAGTGAGGGAGCAATTAAACGGACATATCAAGGATTCCGTAAACGCTCTATGGGTGTTGTACAATTTGACACCACACGAAACCGCTTTTTGGCTGCTGGAGATGAATTTGTGATCAAGTTTTGGGACATGGACAACACTAACCTGTTGACTACAGTTGAGGGTGATGGGGGATTACCGGCTAGCCCCCGCCTCCGGTTCAATAAGGATGGATCCTTGCTAGCTGTTTCAACTAGTGACAATGGTATCAAGATCCTAGCCAATGCTGATGGGCTGCGATTGCTACAAAGATATGAGAACCGCTCTCTTGATTCATCAAGGGTTCCTCCTGACACTGCGTCGAAGGTGGCTCCAGGGAATGCACTTGCAATCGTTAATGCAACTGCAGGGTCGACAACTGTGGGAGCAGAAAGGGGTAGTGCTTCAGTTTCCATCTCTGGACTTAATGGAGACACTAGGAGTATTGGGGATGTTAAAGTCAGGGTGACAGAAGAATCAATAGAGAAGAACAAGGGCTGGAAGTTGACTGAAATAGCTGAACCTTCTCAGTGCCGGTCACTAAAACTTCCTGATAACTTACCAGCGAGCAAGATTTCAAGATTGATATATACTAATTCAGGAGTTGCAATTCTTGCTTTGGCTTCCAATGCTGTTCACAAGCTTTGGAAATGGCAGCGTAATGAG

Fln Alignment:

sp_v1.1_unigene3088___MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDQVVGGEWEEVERYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKADRAKAVEILVKDLKVFASFNEELYKEITQLLTLDNFRENEQLSKYGDTKSARNIMLLELKKLIEANPLFREKLQFPALKASRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHNCGQQNGARPPQPANN-FMG---AFAKXXXXXXXXXXXXXXXPSTNPPSALAGWMANPAP-VPHTSLSAGPVGLSSATSPAAMVK
A9NV83______________MTSLSRELVFLILQFLDEEKYKDTVHKLEQESMFFFNMKYFEDQVQAGEWEEVERYLSGFTKVEDNCYSMKLFFEIRKQKYLEALDKQDREKALEILVKDLKVFSSFNEELFKQITQLLPLDNFRENAQLSKYGDTKSARNILLLELKKLLEANPMFSDKLQFPALKAARLRTLINQSLNWQHQLCKNPRPNPDIKTLFIDHTCTPSNGCRVPMPSSNPLMGDIKGAAFPPFTPHSLNQPLPFQPTGGPASSLAGWMTNTNPAAAHAAGSAGPVSLAPTPNAVAFLK

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
1696	71		14		0.984337
1758	50		50		1.0
1830	33		66		1.0
2091			86	13	0.999973
2094	73			20	1.0
2098	73		26		1.0
2099	73	13		13	0.999956
2100		86	13		0.999973
2104			26	73	1.0
2105		13	13	73	0.999956
2106		13		86	0.999973
2107	13	13		73	0.999956
2109		13	86		0.999973
2111	13			86	0.999973
2113		86	13		0.999973
2114	15			84	0.999986
2115		15		84	0.999986
2116			15	84	0.999986
2119			15	84	0.999986
2459		75		25	0.996473
2513		75		25	0.996473
2567	83			16	0.994512
2569			85	14	0.993533
2571			14	85	0.993533
2572	14			85	0.993533
2573		85	14		0.993533
2635		85	14		0.993533
2650		14		85	0.993533
2652		14	85		0.993533
2653	14		85		0.993533
2705	14		71	14	0.984337
2707	14	85			0.993533
2708		85	14		0.993533
2710			14	85	0.993533
2711	14			85	0.993533
2714	85	14			0.993533
2715	28			71	1.0
2717	71		28		1.0
2719			85	14	0.993533
2720		28	71		1.0
2721	28	71			1.0
2722	71			14	0.984337
2725		85	14		0.993533
2727	85	14			0.993533
2728			14	85	0.993533
2863		25		75	0.996473
2924		25	75		0.996473
2925		25	75		0.996473
2926	75	25			0.996473
2928		75		25	0.996473
2944		33	66		0.997452
2947	33		66		0.997452
2948	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain