SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene3039

Length: 1880 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene3039

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12); ubiquitin thiolesterase/ ubiquitin-specific protease n=1 Tax=Arabidopsis thaliana RepID=UPI00017394C5	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Blast2go	ubiquitin carboxyl-terminal	-	-	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	92%

Source	InterPros	Term	Type	Identity
Blast2go	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	IPR001394	-	92%
Blast2go	MATH	IPR002083	-	92%
Blast2go	TRAF-like	IPR008974	-	92%
Blast2go	TRAF-type	IPR013322	-	92%
Blast2go	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site	IPR018200	-	92%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSM8

Fln msg: your sequence is longer than subject: 561 - 123

Fln protein: MTMMTPPPPLDEDEEMLVPNSDYADGIDTMEPAQSESVSTVENQPTEEPPLFKFTWPIEHVSRLNVKKCYSDVFIVGGYKWRVLIFPKGNNVDHLSIYLDVADSATLPYGWSRYAFFSLAIVNQIHHKFTVKKETQHQFNARESDWGFTSFMPLLDVYDPTKGYLIDDTLIVEAEVSARRVPDYWAYDSKKQTGFVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDIPSKSIPLALQSLFYKVQYSDTSVSTKDLTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTAVEDTIKHLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVEQLDGDNKYHAEQYGLQDAKKGVLFLDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRDNGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEEVKRALEEQYGGEEELPQTNPGLINSPGFINTPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIAEHLRVRTSPGNTFFFSQL*

Protein Length: 562

Fln nts: TACATGGGGAAAGACGGTATAACTTATCTGGCAAGGTATCATTCTTGTTCTTTACCTTAAGAATTTGGGATTTGGAGGTTGAAACCTGCGAGGTCGAATCCCAAGCGAGGAACATAGTGAAATCGAAAGAGTGAGATACCAGTCCGGA_-_ATGACTATGATGACACCCCCTCCTCCTCTGGATGAGGACGAAGAAATGTTGGTGCCCAACTCCGATTACGCAGACGGTATTGATACAATGGAACCAGCACAAAGCGAGTCAGTGAGCACAGTAGAGAATCAGCCCACGGAGGAGCCCCCACTATTCAAATTCACATGGCCGATTGAGCATGTCTCCAGATTGAATGTAAAGAAGTGTTACTCGGATGTTTTCATAGTAGGGGGTTATAAATGGCGTGTCTTGATATTCCCCAAAGGGAACAACGTGGACCACTTATCCATTTACTTAGATGTGGCAGATTCCGCTACATTACCTTATGGTTGGAGCAGATATGCCTTTTTCAGTCTGGCTATTGTTAATCAGATTCATCACAAGTTCACCGTCAAGAAAGAAACACAACACCAGTTCAATGCCCGGGAGAGCGATTGGGGATTCACATCATTCATGCCTCTACTTGATGTGTACGACCCCACAAAAGGATATTTGATAGACGATACTTTGATTGTGGAAGCAGAAGTCAGTGCACGAAGGGTACCTGATTATTGGGCATATGATTCTAAAAAGCAGACGGGTTTTGTTGGGCTGAAGAATCAAGGGGCAACATGCTACATGAATTCTTTGCTTCAGACATTGTATCATATTCCTTACTTCAGAAAGGCTGTCTATCATATGCCCACAACTGAAAATGATATACCCTCAAAAAGTATTCCATTGGCTCTACAGAGCTTGTTTTATAAAGTCCAGTACAGTGACACCAGCGTTTCAACAAAAGACTTGACCAAATCATTCGGATGGGACACGTATGATTCTTTCATGCAACATGATGTGCAGGAGCTAAACCGAGTACTTTGCGAGAAGTTAGAAGATAAAATGAAGGGCACAGCTGTTGAGGATACAATAAAGCATCTATTTGAAGGACATCATATGAACTACATTGAGTGCATAAATGTGGATTATAAATCTACAAGGAAGGAATCGTTCTATGATCTACAGCTTGATGTTAAAGGCTGCCGAGATGTCTATGCTTCATTTGATAAGTATGTTGAAGTTGAACAACTTGATGGTGATAACAAATATCATGCAGAGCAGTATGGACTACAGGATGCAAAAAAAGGTGTTCTTTTCCTTGATTTTCCTCCTGTACTACAACTTCAGTTGAAGCGATTTGAATACGATTTCATGCGAGACACAATGGTCAAGATAAATGATCGATATGAATTTCCACTTCAACTTGACTTGGATAGAGACAATGGCAAATATCTCTCTCCAGATGCAGATAGAAGTGTGCGCAATTTATATACTCTTCATAGTGTTTTGGTTCACAGTGGAGGTGTGCATGGTGGTCATTATTACGCTTTCATTAGACCAACTCTCTCAGACCAGTGGTACAAGTTTGATGATGAACGTGTCACAAAGGAAGAAGTAAAGAGAGCACTTGAGGAGCAATATGGTGGTGAAGAGGAGCTGCCTCAGACAAATCCAGGCCTCATCAACAGTCCAGGATTCATCAACACACCATTTAAATTTACAAAATACTCTAATGCCTATATGCTTGTGTATATAAGAGAAAGTGACAAGGATAAGATTATTTGCAATGTTGATGAGAAAGATATAGCGGAGCACCTGCGGGTAAGAACTTCACCTGGGAATACCTTTTTCTTTTCTCAATTGTAG___AGATGAATAGAGAGTGTAACTCAGATGTTATGATCCTTTTACAATTTTA

Fln Alignment:

sp_v1.1_unigene3039___IDTMEPAQSESVSTVENQPTEEPPLFKFTWPIEHVSRLNVKKCYSDVFIVGGYKWRVLIFPKGNNVDHLSIYLDVADSATLPYGWSRYAFFSLAIVNQIHHKFTVKK
A9NSM8______________LKTMEHAQSETVRVTEIIQFDK---FTCAWAIEHFSSLDAERHYSDIFTVGGHKWRLLIFPKGNNVDYLSIYLDVPDSATLPHGCSKYAEFSLAVVNLTDPQLTIRK

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
583		75		25	1.0
625		60		40	1.0
1797	80	20			0.995493
1798	20	40			1.0
1802		60	40		1.0
1804	25	75			0.996473
1805		75	25		0.996473
1806	25			75	0.996473
1807	25		75		0.996473
1808	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain