SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2962

Length: 1400 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2962

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	mRNA splicing factor, putative	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	43%
Blast2go	mrna splicing	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	developmental growth	GO:0048589	Biological Process	72%
Blast2go	RNA 3'-end processing	GO:0031123	Biological Process	72%
Blast2go	protein binding	GO:0005515	Molecular Function	72%
Blast2go	transcription repressor activity	GO:0016564	Molecular Function	72%
Blast2go	mRNA binding	GO:0003729	Molecular Function	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	RNA recognition motif domain	IPR000504	-	0.0	72%
Blast2go	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	72%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXV2

Fln msg: Distance to subject end: 237 aas, your sequence is shorter than subject: 394 - 516

Fln protein: MTTPQHRCVFVGNIPYDATEEQLVQICEEVGPVVSFRLVVDRETGKPKGYGFCEYRDEETAASARRNLQGYEINGRQLRVDYAENDKGVDRNREQGRGGPGLASNFDSQKSSVGPAISGDPSFNQPIGLTVAAAAASVMAGTLGEPQTSVIDQNQNAIQGQTNVGGNDPLTLYLAGMSRNQLCEFLNEMKALAQQNQQQARHILLLHPQLPKAIFQAQLMLGVVTPQMLPNFRSDPSIQSGQQGQMRLAQNQIQPGKQTQMQAGQHSQVQLLQQSQSQNIPMQQLMQPPPVQSSIQVIQPTQPQVPQTILQSLQSASQSLNLPVQPPMQSPPRTVQSQVPPLLSGQPQQPSNQPSLGSLHQPPLPQQPRPLLQSLPPAGQVQNQPTQNMAFKPS

Protein Length: 395

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGTCGTAGGGTATTCATCAAATCATTTGGATGCAGGCAGCGCGGAAAGGAGAGAGTTACAATTATGAAATGCTGTAGCAGTTGTAAGGCGTACCTGTGAGGCGGCGCTGGCATTCCCCTCCGGTGGTGATAATTGTTGGTAGTTTCTTTATCTTTGGGGAAAATTGACGGTTCCGCGTAGAAGTGTTCAATC_-_ATGACTACTCCACAACACCGCTGTGTTTTCGTGGGAAATATACCATATGATGCAACAGAAGAACAACTGGTACAGATATGTGAAGAAGTTGGACCTGTTGTATCTTTTCGATTGGTAGTTGACAGAGAAACTGGGAAACCTAAGGGTTATGGATTTTGTGAGTATAGAGATGAGGAGACAGCAGCTAGTGCACGTAGAAATCTCCAAGGGTATGAAATAAATGGTCGGCAGCTACGTGTTGACTATGCCGAAAATGACAAAGGTGTGGACAGAAATAGGGAGCAGGGTCGAGGTGGACCTGGTCTGGCCTCAAATTTTGATAGTCAGAAATCATCTGTAGGCCCTGCTATCTCTGGGGATCCATCATTTAATCAACCTATAGGCCTTACAGTGGCAGCTGCTGCAGCATCTGTCATGGCAGGAACACTGGGAGAGCCACAGACGTCTGTGATAGATCAAAATCAGAATGCCATCCAAGGTCAAACTAATGTTGGAGGAAATGATCCTCTCACCCTTTATTTAGCTGGCATGTCCAGGAACCAGCTCTGTGAGTTCCTGAATGAGATGAAGGCTCTAGCTCAACAAAATCAACAGCAGGCTCGCCACATTTTGCTTCTGCATCCGCAATTGCCGAAAGCTATTTTTCAGGCACAGCTAATGCTTGGAGTGGTGACCCCACAAATGTTGCCCAACTTCCGGTCAGATCCTTCAATACAGTCTGGTCAACAGGGTCAGATGCGTTTAGCACAAAATCAGATTCAACCTGGGAAGCAAACCCAGATGCAGGCTGGGCAGCACAGTCAGGTCCAATTGTTACAGCAATCTCAATCCCAAAACATTCCAATGCAACAGTTAATGCAACCACCTCCAGTGCAGTCTTCAATTCAGGTTATCCAACCAACTCAACCTCAAGTGCCACAGACAATATTGCAGTCTCTACAATCGGCATCTCAAAGTTTGAATTTGCCAGTACAACCGCCAATGCAGTCTCCCCCACGCACAGTACAGTCTCAAGTTCCTCCTCTTCTTTCAGGTCAGCCTCAACAACCTTCCAACCAGCCAAGCCTGGGGAGTCTACATCAACCACCACTGCCACAGCAACCAAGGCCATTGTTGCAATCTCTTCCACCTGCAGGCCAGGTGCAAAATCAACCAACTCAGAATATGGCGTTCAAACCATCAA

Fln Alignment:

sp_v1.1_unigene2962___MAGTLGEPQTSVIDQNQNA--IQGQTNVGGNDP-------LTLYLAGMSRNQLCEFLNEMKALAQQNQQQARHILLLHPQLPKAIFQAQLMLGVV-TPQMLPNFRSDPS-------------IQSGQQGQMRLAQNQIQPGKQTQMQAG
A9NXV2______________MAGAFGGQYTSMAGQNQNAGQINGQSNPSGNSANAAGNRSFTSHIAGMSKPQLYDLMSQMKLLIEQNEQQARQILVANPAMTKTLFQAQIMLGMLRPPQVMPNIQQSLSQPPQPVQVGHQGQIQPRPQGQMNSVQSQIQPRQTTQMQVG

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
845	80			20	0.995493
846	80	20			0.995493
847			20	80	0.995493
849	20		80		0.995493
850	20	80			0.995493
852		20	80		0.995493
853	80			20	0.995493
854	80			20	0.995493
855	80		20		0.995493
859	80		20		0.995493
861		20		80	0.995493
862	20			80	0.995493
863		20		80	0.995493
907		83		16	0.999991
1044			10	90	0.90298
1045		90	10		0.90298
1046	90		10		0.90298
1110		12		87	0.992554
1112			12	87	0.992554
1117		87		12	0.992554
1251	33			66	0.997452
1252			33	66	0.997452
1254		66	33		0.997452
1259	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain