SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2788

Length: 1612 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene2788 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Indole-3-acetic acid-amido synthetase GH3.17, putative n=1 Tax=Ricinus communis RepID=B9RG18_RICCO	-	-	67%
FL-Next	tr=Auxin-induced GH3 protein; Pinus pinaster (Maritime pine).	-	-	65%
Blast2go	gh3 family protein	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	75%
Blast2go	auxin mediated signaling pathway	GO:0009734	Biological Process	75%
Blast2go	indole-3-acetic acid amido synthetase activity	GO:0010279	Molecular Function	75%
Blast2go	cytoplasm	GO:0005737	Cellular Component	75%
Blast2go	nucleus	GO:0005634	Cellular Component	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	GH3 auxin-responsive promoter	IPR004993	-	0.0	75%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q4LAM0

Fln msg: Overlapping hits, possible frame ERROR between 366 and 365, your sequence is shorter than subject: 390 - 615

Fln protein: ASAFLRAVKFLEENWKELCDNIRRGQLSDWIDDPPSRIAVMKMLSPNPQLAEEIHRECSKKSWQGIITRLWRKTIYIDVIVTGTMAQYIPTLDYYGGGLPLVSTMYASSECYFGVNLKPLKxxPSEVSYTLLPNMAYFEFLPVHKENGSTAENLDLQSNGTTNGKNMEDELVDLVDVKVGHYYELVVTTYAGLYRYRVGDILLVTGFYNRAPQFEFVYRRNVVLSIDTDKTNEEDLLKAVTNAKKLLEPFNALLSEYTSYADTSTLPGHYVLFWELTTRGEFLDASVLENCCSTIEESLDSIYRRCRTRDKSIGPLEIRVVKPGTFDLLMDYCLNQGSSYNQYKTPRCIKSLHTLGLLNSRVSASYFSKRLPSWTPYNPCSLNPNSQLH*

Protein Length: 391

Fln nts: GCCTCAGCATTTCTCAGGGCCGTTAAGTTTCTAGAAGAAAACTGGAAAGAACTCTGCGACAACATACGCAGAGGGCAGCTCAGCGACTGGATCGACGATCCTCCATCCAGAATTGCTGTCATGAAGATGCTCAGTCCGAACCCCCAACTAGCAGAAGAAATCCATAGGGAATGCAGCAAGAAATCATGGCAAGGAATAATTACCCGCCTGTGGAGAAAGACAATATACATAGATGTGATAGTCACGGGAACCATGGCACAGTATATTCCAACTCTTGATTACTATGGTGGAGGGCTCCCTCTAGTATCTACCATGTATGCATCTTCTGAGTGTTATTTTGGTGTGAATCTGAAACCTCTGAAGxxxxxxCCCTCTGAGGTGTCCTATACATTGCTGCCTAATATGGCCTATTTTGAATTTCTTCCTGTGCATAAGGAAAATGGCAGTACTGCAGAAAACCTAGATTTGCAGTCCAATGGCACAACAAATGGGAAAAACATGGAGGATGAATTAGTGGACCTAGTGGATGTGAAAGTTGGTCACTACTATGAACTTGTAGTAACAACTTATGCAGGTTTATATCGATATAGGGTCGGGGACATTCTCCTAGTGACAGGTTTCTACAACAGAGCCCCTCAGTTTGAGTTTGTCTACCGTAGAAACGTGGTTCTCAGTATCGACACAGACAAAACAAATGAAGAAGATTTGTTAAAGGCTGTCACCAATGCCAAGAAATTGTTAGAACCATTCAATGCCCTGTTATCAGAGTACACTAGCTATGCTGATACATCCACACTACCCGGTCACTATGTTCTGTTCTGGGAACTGACTACCAGGGGAGAATTTCTGGATGCATCCGTATTGGAAAACTGCTGCTCAACGATCGAGGAATCCTTGGATTCTATCTACAGAAGATGCAGAACCAGAGATAAGTCTATTGGCCCGCTAGAGATAAGGGTAGTGAAGCCTGGGACGTTTGATTTGTTAATGGATTATTGTCTGAATCAAGGCTCTTCCTACAATCAATACAAAACTCCCAGATGTATCAAGTCTCTCCATACCCTAGGGCTTCTAAATTCAAGAGTCAGTGCCAGTTACTTTAGCAAACGTCTTCCATCCTGGACACCCTACAACCCTTGCAGCTTGAATCCAAATTCTCAGCTTCATTAACTGAGAAAGGATCCCAAATGAAGTCTATTATATCAGCACTCAATTCATTGTTTACTTCTATGATTCTAAAAAGTGGCATTCAACGTCAGTCTCAGCTTGAAAGGTTTAAGTTTGCCAACTATGTTCTGTGTACATACATGTGACTTAAAGTGTGTTGTAACATAACTCGTCTCAGAGTTAATCCAACGTGTAACTTTCTTAAAGCTGAGCGTGGAATTAATGCATTAAATGTTTCAGAGAGTTCACATGGAGATAGAAGGCAGGAAACTAACAGTGGGGAACCAGAAACAAACAAGCTGGGAAGGGATATACATGAATGATATATCAGTTGCCATTAATTTTGTTTTACATCGTCTTCTCAGAAGAAATCCCAAAGATTTTACTGAACAAATCAGAGTTTTGTCCTCATGCGCACTTAATCTGTGCTGCAGCTGTGTGTCAGAT

Fln Alignment:

sp_v1.1_unigene2788___ASAFLRAVKFLEENWKELCDNIRRGQLSDW-IDDPPSRIAVMKMLSPNPQLAEEIHRECSKKSWQGIITRLWRKTIYIDVIVTGTMAQYIPTLDYYGGGLPLVSTMYASSECYFGVNLKPLKxPSEVSYTLLPNMAYFEFLPVHKENGSTAENLDLQSNGTTNGKNMXXXXXXXXXVKVGHYYELVVTTYAGLYRYRVGDILLVTGFYNRAPQFEFVYRRNVVLSIDTDKTNEEDLLKAVTNAKKLLEPFNALLSEYTSYADTSTLPGHYVLFWELTTRGEFLDASVLENCCSTIEESLDSIYRRCRTRDKSIGPLEIRVVKPGTFDLLMDYCLNQGSSYNQYKTPRCIKSLHTLGLLNSRVSASYFSKRLPSWT
Q4LAM0______________ASGLLRAIRFLEEHWQSLCQDIRSGTVNDEEVTDPCLRESVMKILHPNTQLADLIRTECSKESWQGIITRLWPNARYLDVIVTGAMAQYIKTLDFYSGGLPQVCTMYASSECYFGINLKPLCxPWEVSYTLMPNMAFFEFLPVYRNKNEDA-------GPVTTATEQPAELVDLVDVKVGQEYELVITTYSGLYRYRVGDVLRVTGFHNAAPQFQFVCRKNVMLSIDADKTDEAELHNAVMNAVKHLEPLEATLVEYTSYTDTSTIPGHYVLYWELRTSALPVPPSVFEDCCLTVEESLNSVYRQCRVADKSIGPLEIKVVEMGTFDKLMDYAISRGSSINQYKAARCVKFAPMVDILNSRVSASYFSPRCPKWT

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
410		16		83	0.994512
411		16	83		0.994512
484		20	80		0.995493
485		20		80	0.995493
487			80	20	0.995493
668	88		11		0.923564
730		12	87		0.992554
731	87	12			0.992554
734	12		87		0.992554
761			44	55	1.0
902	37			62	1.0
903	37			62	1.0
904			37	62	1.0
905	62		37		1.0
906	62			37	1.0
909	62	37			1.0
910	62		37		1.0
911	37			62	1.0
913			37	62	1.0
952		25	75		0.996473
953		25		75	0.996473
954		25		75	0.996473
955	25			75	0.996473
956	25	75			0.996473
989		33		66	0.997452
990		33		66	0.997452
991		33	66		0.997452
1168		33		66	0.997452
1399		90	10		0.90298
1407	10		90		0.90298
1478		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain