SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2682

Length: 963 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2682

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glycine-rich RNA-binding protein, putative	-	-	2.0e-26	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	protein	-	-	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	RNA recognition motif domain	IPR000504	-	0.0	72%
Blast2go	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	72%

Full-Lengther Next Prediction

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
490		22	77		0.999999
494		77	22		0.999999
495	77			22	0.999999
499		22	77		0.999999
501	77			22	0.999999
504	77		22		0.999999
505		77		22	0.999999
507	22			77	0.999999
508		22	77		0.999999
509			77	22	0.999999
510		22	77		0.999999
511	22	77			0.999999
524	89	10			0.999919
525		5	10	84	0.999846
528	89			10	0.999919
529	89		10		0.999919
531	89	10			0.999919
532		10		89	0.999919
536	89		10		0.999919
538	89			10	0.999919
543		10		89	0.999919
567	15		84		1.0
588		86		13	1.0
593		86	13		1.0
735		71		28	1.0
766		69		30	1.0
783	27	72			1.0
889			80	20	0.995493
923		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain