SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2656

Length: 1288 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2656

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	similar to DEG8/DEGP8 (DEGP PROTEASE 8); peptidase/ serine-type peptidase/ trypsin	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	35%
Blast2go	protease degq	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	photosystem II repair	GO:0010206	Biological Process	81%
Blast2go	proteolysis	GO:0006508	Biological Process	81%
Blast2go	peptidase activity	GO:0008233	Molecular Function	81%
Blast2go	chloroplast thylakoid lumen	GO:0009543	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Blast2go	Peptidase S1/S6, chymotrypsin/Hap	IPR001254	-	81%
Blast2go	PDZ domain	IPR001478	-	81%
Blast2go	Peptidase S1C, HrtA/DegP2/Q/S	IPR001940	-	81%
Blast2go	Peptidase cysteine/serine, trypsin-like	IPR009003	-	81%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVJ7

Fln msg: your sequence is shorter than subject: 298 - 463

Fln protein: EGNGSGVVWDEQGHIVTNYHVIGNALSKNPRRDQVVARVNILAFDGVQKSFEGTLVGADRTKDLAVLKVDAPQEILRAVESGQSSKLKVGQRCFAIGNPFGFDHTLTAGVLSGLNREIFSQAGVTISGGIQTDAAINPGNSGGPLLDSKGKLIGINTAIFTQTGTSAGVGFAIPSDAVLKIVPQLIQSGKVMRPGLNVDIAPEVIANQLNVRSGALVLSVPENSAAAKAGMIPTKRGFAGKIILGDVIVSIDNHTIKNASYLSKILDDYVVGDKVVLKVQRINGVVEIPITLEESII*

Protein Length: 299

Fln nts: GAAGGAAATGGTTCTGGAGTAGTCTGGGATGAGCAAGGGCATATTGTGACCAACTATCATGTGATTGGTAATGCCCTCTCAAAAAATCCCAGGCGTGATCAAGTGGTTGCCCGGGTTAATATTCTTGCATTTGATGGGGTTCAAAAGAGTTTTGAGGGTACATTGGTTGGTGCAGACCGCACAAAAGATCTTGCTGTCTTGAAGGTGGATGCCCCTCAGGAGATCCTGCGGGCAGTTGAATCTGGGCAGTCCTCTAAACTTAAAGTAGGTCAACGATGCTTTGCAATTGGTAACCCATTTGGTTTTGATCACACTTTGACTGCTGGGGTACTTAGCGGATTGAACCGTGAGATATTTAGTCAAGCAGGCGTGACTATAAGTGGGGGTATTCAGACTGATGCAGCCATCAATCCTGGCAATAGTGGTGGTCCATTACTAGATTCCAAAGGAAAATTGATTGGGATTAACACAGCGATATTTACTCAAACAGGAACATCAGCAGGAGTAGGTTTCGCTATTCCAAGTGACGCAGTCCTCAAGATTGTGCCTCAGTTGATACAATCTGGGAAGGTAATGCGTCCAGGATTAAATGTAGATATAGCCCCTGAGGTAATTGCAAATCAATTAAACGTGAGAAGTGGAGCTCTTGTTCTATCGGTTCCGGAAAACAGTGCTGCAGCAAAGGCAGGGATGATTCCAACAAAGAGAGGATTTGCTGGTAAAATAATTCTTGGTGATGTGATTGTTTCCATCGACAATCATACGATAAAAAATGCATCATATCTTTCCAAAATTTTGGATGATTACGTTGTGGGGGACAAAGTAGTCTTAAAGGTTCAGCGAATCAATGGTGTGGTAGAAATACCAATTACATTGGAAGAGAGCATAATATAA___CAAGCCAATCTCACCCATTTTAACTTGCTGCAGTGGTACTAAAATTGCTGTTCCTCTTTCATTAATCAAGCATGAGAAGCATCCATATCATGATTTCGATTTATTTCTCAATTTGAACTGCCATTAACTTGAAACAATGATTTAAAAATTTATCTTTCTGGATATTTTACTATTTTGGAAGCATTTTCGTACTGTGGCACATTTGGTTTATGAGAACTTGAGAGCATCTAGCGAGAAAGCTCTGCTTGTGCTGGATGAAATGAAAAGACAGGAACCTGTAATTGCAGTTGGTAAAGCTGTCTTGAGTTTTTGACCGCAATCACCATTTCTTCATTGGAGCAAAGCATTATATAAAATGCAAGGGATACAAAAACCATTTTGAGTATTGACGTAG

Fln Alignment:

sp_v1.1_unigene2656___GSGVVWDEQGHIVTNYHVIGNALSKN-PRRDQVVARVNILAFDGVQKSFEGTLVGADRTKDLAVLKVDAPQEILRAVESGQSSKLKVGQRCFAIGNPFGFDHTLTAGVLSGLNREIFSQAGVTISGGI-------QTDAAINPGNSGGPLLDSKGKLIGINTAIFTQTGTSAGVGFAIPSDAVLKIVPQLIQSGKVMRP--GLNVDIAPEVIANQL--------NVRSGALVLSVPENSAAAKAGMIPTKRGFAGKIILGDVIVSIDNHTIKNASYLSKILDDYV-VGDKVVLKVQRINGVVE-IPITLEES
A9NVJ7______________GSGTIIDSNGTILTNAHVVAEFTSAGVPYKGKVVVTLQ----DG--RTFDGEVINADFHTDIAVVRINTKVP-LPAAKLGSSSKLRPGDWVIALGCPLSLQNTVTAGIVSYVDRKS-SDLGL---GGIRREYYYLQTDCAINEGSSGGPLVNLDGEVIGINT---MKALAADGVSFAIPIDSVIKTVEHFKKHGRVVRPWLGLKMLELNELIIAQLKERDPSFPDVTEGVLVPQVTPGSPAHRSGFRP-----------GDVVVQFDGKPTKSIKEIVEIMGDKVGVAFKVIVK--RSNNVQETLTIVPEEA

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
755		85		14	0.993533
1009			11	88	0.923564
1010	11			88	0.923564
1011			11	88	0.923564
1016	11			88	0.923564
1025		88		11	0.923564
1051		80		20	0.995493
1136		25	75		1.0
1173		66		33	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain