SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2614

Length: 335 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene2614
TTGGTTTGATTTGAAGGTCAACACACATGTTTATGTGACTGGATTACCAGAGGATGTTACTGCTGAAGAAATTGTAGAGGCATTCTCAAAATGCGGGATCATCAAAGAGGATCTTGATACTAAGAAGCCACGAGTGAAGGTTTACGTTGACAAAGAGACTGGAAAACAGAAAGGAGATGCACTTGTGACTTATTTGAAGGAGCCTTCAGTGGATTTGGCACTTAAAATTTTGGATGGAACTCCTTTACGTCCTGGTGGAAAGCAACTTATGTCAGTCAGTAAAGCAAAATTTGAGCAGAAGGGGGACACATTTATCAAAAAACAACAAAATAACC

Ace file of the UniGene sp_v1.1_unigene2614

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Splicing factor U2AF-associated protein, putative n=1 Tax=Ricinus communis RepID=B9RH81_RICCO	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	protein	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	GO:0000184	Biological Process	87%
Blast2go	negative regulation of flower development	GO:0009910	Biological Process	87%
Blast2go	mRNA binding	GO:0003729	Molecular Function	87%
Blast2go	nucleus	GO:0005634	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Blast2go	RNA recognition motif domain	IPR000504	-	0.0	87%
Blast2go	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	87%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AB20

Fln msg: Distance to subject end: 140 aas, your sequence is shorter than subject: 111 - 525

Fln protein: WFDLKVNTHVYVTGLPEDVTAEEIVEAFSKCGIIKEDLDTKKPRVKVYVDKETGKQKGDALVTYLKEPSVDLALKILDGTPLRPGGKQLMSVSKAKFEQKGDTFIKKQQNN

Protein Length: 112

Fln nts: TTGGTTTGATTTGAAGGTCAACACACATGTTTATGTGACTGGATTACCAGAGGATGTTACTGCTGAAGAAATTGTAGAGGCATTCTCAAAATGCGGGATCATCAAAGAGGATCTTGATACTAAGAAGCCACGAGTGAAGGTTTACGTTGACAAAGAGACTGGAAAACAGAAAGGAGATGCACTTGTGACTTATTTGAAGGAGCCTTCAGTGGATTTGGCACTTAAAATTTTGGATGGAACTCCTTTACGTCCTGGTGGAAAGCAACTTATGTCAGTCAGTAAAGCAAAATTTGAGCAGAAGGGGGACACATTTATCAAAAAACAACAAAATAACC

Fln Alignment:

sp_v1.1_unigene2614___WFDLKVNTHVYVTGLPEDVTAEEIVEAFSKCGIIKEDLDTKKPRVKVYVDKETGKQKGDALVTYLKEPSVDLALKILDGTPLRPGGKQLMSVSKAKFEQKGDTFIKKQQNN
D5AB20______________WFDLKVNTHVYVTGLPEDVTTEEIVEAFSKCGIIKEDLDTKKPRVKIYVDKETGRQKGDALVTYLKEPSVDLAIQILDGTPLRPGGRQLMSVSIAKFEQKGDTFIKKQQNN

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain