SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2594

Length: 2206 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene2594
ATGTTTTGACTTGGAATTTACAGGCCTGCCAGAGCCTTTTGTGGTTCATCTTAACAATGAAGCTGAGTGGATATAGACATATATGATATATATCAATGTATGGTATACAGGAACGGATTCTTCACCTAGATTTTGGAACTCCTGAGAGAACTTGCAGTTGGGATACATATAGATAGCAGCGAATACATAAAACATTTTCTGTCTGCCCAAGACCAACATATGGACATTCCAACTGGGTTTCCTGCCACTCTGTGGAGCTTCCTGACTTTCCTACCCTTCTTCATATTGCTATTTCTCCTCGGTATTATCAAAGGTGTAATATTTTGCCCAGTGGTATGTCTTGTGATGACAATTGGAAATTCAGCAGTGATTTTTGGCCTTTGGCCGGCACATGTGATCTGGACATATGTCTGCGTGGTCAGAGCCAAACGACTAGGACCAACTTTAAAGGCTATTCTATGTATGGGCCTACCAGTGCCACTAATTTTGTGGCCATTGGTAGGCCTTATTGGAAGCATTCTGGCAGGCTTAGGCTATGGTCTCTTTACACCCTTGGTGGCAACATTTGAGGCTATTGGAGAGGAGCATGAAAACAATTTGTTGATTGCATTTTGAGTGGGACGTGGAGTACAGTCAAAGGAAGCTTTACAGTGGTGCGGGATGTGACAGATACGTGCTTTCACTCTTACTTTTCTCTTATGGATGACTTGCGTGAACAACCACCAAAAAATGGAAGCCCTCTGGATATCAAGTTGCTAGAGCTACCGGGTAGTTTCCTGGTAGGCCTGCTAGGTGTGATTGTGGATGTGCCAATGATCTTATTGATAACACTCTGGAAGAGCCCTTACATGCTTTTCAAAGGATGGCATCGACTACTGCATGATCTTATAGGTAGGGAAGGTCCCTTCTTGGAGACCGTTTGTGTACCATTTGCTGGTCTTGCCATCCTTCTTTGGCCTCTGGTGGTGATTGCTGCTGTCTTAAGTGCCTTCGTGTCAAGCTTCTTCCTTGGCTTTTATGCCGCTGTTGTTGTGTATCAGGAATCTTCAATTAAGTTGGGATTAGCATATGTTGTGTCTGCAATAGCACTGTTTGATGAATACAGCAATGATTTCTTGTATATGCAAGAAGGATCCTGCTTTCCAAGGCCTAAGTACCGCAGCCAAAGCATGCCTTTGTCTGGAACCTTATCAAGGCGATATTCACTTGGCAAGGATGGATCATATGGAAGGAGTGGCTCTATCAGCCCAGGTAACAAAATGTCAGGTCCCCAGCGCACAAAGTCTTTGAAGAAGAACATACAAGAAATGAAGCCTTTGCAGATGTGGGATCATCTTTTTGAGTCATCTGAGTGTAATGGAAAGACCCTGGTTGAGGAAAATGTAATTAAAATTTCAGACATAGAGGAGTGGAACCGTACTGCGAAGTGCAAAATACTCAGTGTTGGGTTACCTGCTTACTCTATTTTGCAGAACCTTATTTGTTCTGCAAAGAATGATTCAGCTGGATTTATGTTTACTGATGGAACTGAGATAACAGCCATTAGTCGAACTGAGGATCGACTATTTGAGTGGTTCTTTGAGCCATTAATGATCATTAAAGAGCAAATCAAGGCTGAACAACTTCAGGAGAGTGAAGAACTTTACTTGAGTAAATTGGTCTTATTAAGTGGTTTTCCAGACCGTATGAAAGCTTGGCAAAATGGTGGCATTCCTCCTGCAGATGATGTCAGAAGAGCGGAATTGGAAGCGTTGAGCAGAAGATTACGGGGGATTGCAGGGTCTATTTCTATAATGCCAACCTTTAGGCGCCGATTTCAGCATGTTGTGAAAAATCTACATCCAGTGGCAGTAGAAAGGGTGAGCAGCAGTGTACATAGCCGGGAATCAATAGCTGAAAGCAATATTTCTGACGGTGGTTCGAAATCTAGAAATAGGATAGGTAGATTATTCAGCCAAAAATCAGGAGGAAGGAAAGAACACACTTCAGACATAACAAGGCAAGAAATAAACAGATACAATGATGAAGGTATATAGAACTTGGGCTCTATGAACAGCCATGCCCTTTGTAATATTTGCTTGTGATCTTCTCTCACATTTTTGTTTCATTAATTTTCAATTTAATTTCATTTCTGCAAATATGGCAAGTATAGTTCTGATAAGCTACAGAGAGTGCAGATTCTTAATTCATAGATATCTAGCTATTG

Ace file of the UniGene sp_v1.1_unigene2594

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MFS_1 domain containing protein	-	-	9.0e-05	15%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	protein	-	-	0.0	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	0.0	67%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKD0

Fln msg: Overlapping hits, possible frame ERROR between 603 and 594,

Fln protein: MDIPTGFPATLWSFLTFLPFFILLFLLGIIKGVIFCPVVCLVMTIGNSAVIFGLWPAHVIWTYVCVVRAKRLGPTLKAILCMGLPVPLILWPLVGLIGSILAGLGYGLFTPLVATFEAIGEEHExxxxxCILSGTWSTVKGSFTVVRDVTDTCFHSYFSLMDDLREQPPKNGSPLDIKLLELPGSFLVGLLGVIVDVPMILLITLWKSPYMLFKGWHRLLHDLIGREGPFLETVCVPFAGLAILLWPLVVIAAVLSAFVSSFFLGFYAAVVVYQESSIKLGLAYVVSAIALFDEYSNDFLYMQEGSCFPRPKYRSQSMPLSGTLSRRYSLGKDGSYGRSGSISPGNKMSGPQRTKSLKKNIQEMKPLQMWDHLFESSECNGKTLVEENVIKISDIEEWNRTAKCKILSVGLPAYSILQNLICSAKNDSAGFMFTDGTEITAISRTEDRLFEWFFEPLMIIKEQIKAEQLQESEELYLSKLVLLSGFPDRMKAWQNGGIPPADDVRRAELEALSRRLRGIAGSISIMPTFRRRFQHVVKNLHPVAVERVSSSVHSRESIAESNISDGGSKSRNRIGRLFSQKSGGRKEHTSDITRQEINRYNDEGI*

Protein Length: 607

Fln nts: ATGTTTTGACTTGGAATTTACAGGCCTGCCAGAGCCTTTTGTGGTTCATCTTAACAATGAAGCTGAGTGGATATAGACATATATGATATATATCAATGTATGGTATACAGGAACGGATTCTTCACCTAGATTTTGGAACTCCTGAGAGAACTTGCAGTTGGGATACATATAGATAGCAGCGAATACATAAAACATTTTCTGTCTGCCCAAGACCAACAT_-_ATGGACATTCCAACTGGGTTTCCTGCCACTCTGTGGAGCTTCCTGACTTTCCTACCCTTCTTCATATTGCTATTTCTCCTCGGTATTATCAAAGGTGTAATATTTTGCCCAGTGGTATGTCTTGTGATGACAATTGGAAATTCAGCAGTGATTTTTGGCCTTTGGCCGGCACATGTGATCTGGACATATGTCTGCGTGGTCAGAGCCAAACGACTAGGACCAACTTTAAAGGCTATTCTATGTATGGGCCTACCAGTGCCACTAATTTTGTGGCCATTGGTAGGCCTTATTGGAAGCATTCTGGCAGGCTTAGGCTATGGTCTCTTTACACCCTTGGTGGCAACATTTGAGGCTATTGGAGAGGAGCATGAAxxxxxxxxxxxxxxxTGCATTTTGAGTGGGACGTGGAGTACAGTCAAAGGAAGCTTTACAGTGGTGCGGGATGTGACAGATACGTGCTTTCACTCTTACTTTTCTCTTATGGATGACTTGCGTGAACAACCACCAAAAAATGGAAGCCCTCTGGATATCAAGTTGCTAGAGCTACCGGGTAGTTTCCTGGTAGGCCTGCTAGGTGTGATTGTGGATGTGCCAATGATCTTATTGATAACACTCTGGAAGAGCCCTTACATGCTTTTCAAAGGATGGCATCGACTACTGCATGATCTTATAGGTAGGGAAGGTCCCTTCTTGGAGACCGTTTGTGTACCATTTGCTGGTCTTGCCATCCTTCTTTGGCCTCTGGTGGTGATTGCTGCTGTCTTAAGTGCCTTCGTGTCAAGCTTCTTCCTTGGCTTTTATGCCGCTGTTGTTGTGTATCAGGAATCTTCAATTAAGTTGGGATTAGCATATGTTGTGTCTGCAATAGCACTGTTTGATGAATACAGCAATGATTTCTTGTATATGCAAGAAGGATCCTGCTTTCCAAGGCCTAAGTACCGCAGCCAAAGCATGCCTTTGTCTGGAACCTTATCAAGGCGATATTCACTTGGCAAGGATGGATCATATGGAAGGAGTGGCTCTATCAGCCCAGGTAACAAAATGTCAGGTCCCCAGCGCACAAAGTCTTTGAAGAAGAACATACAAGAAATGAAGCCTTTGCAGATGTGGGATCATCTTTTTGAGTCATCTGAGTGTAATGGAAAGACCCTGGTTGAGGAAAATGTAATTAAAATTTCAGACATAGAGGAGTGGAACCGTACTGCGAAGTGCAAAATACTCAGTGTTGGGTTACCTGCTTACTCTATTTTGCAGAACCTTATTTGTTCTGCAAAGAATGATTCAGCTGGATTTATGTTTACTGATGGAACTGAGATAACAGCCATTAGTCGAACTGAGGATCGACTATTTGAGTGGTTCTTTGAGCCATTAATGATCATTAAAGAGCAAATCAAGGCTGAACAACTTCAGGAGAGTGAAGAACTTTACTTGAGTAAATTGGTCTTATTAAGTGGTTTTCCAGACCGTATGAAAGCTTGGCAAAATGGTGGCATTCCTCCTGCAGATGATGTCAGAAGAGCGGAATTGGAAGCGTTGAGCAGAAGATTACGGGGGATTGCAGGGTCTATTTCTATAATGCCAACCTTTAGGCGCCGATTTCAGCATGTTGTGAAAAATCTACATCCAGTGGCAGTAGAAAGGGTGAGCAGCAGTGTACATAGCCGGGAATCAATAGCTGAAAGCAATATTTCTGACGGTGGTTCGAAATCTAGAAATAGGATAGGTAGATTATTCAGCCAAAAATCAGGAGGAAGGAAAGAACACACTTCAGACATAACAAGGCAAGAAATAAACAGATACAATGATGAAGGTATATAG___AACTTGGGCTCTATGAACAGCCATGCCCTTTGTAATATTTGCTTGTGATCTTCTCTCACATTTTTGTTTCATTAATTTTCAATTTAATTTCATTTCTGCAAATATGGCAAGTATAGTTCTGATAAGCTACAGAGAGTGCAGATTCTTAATTCATAGATATCTAGCTATTG

Fln Alignment:

sp_v1.1_unigene2594___MDIPTGFPATLWSXXXXXXXXXXXXXXXXXXXXXXCPVVCLVMTIGNSAVIFGLWPAHVIWTYVCVVRAKRLGPTLKAILCMGLPVPLILWPLVGLIGSILAGLGYGLFTPLVATFEAIGEEHENxxxDCILSGTWSTVKGSFTVVRDVTDTCFHSYFSLMDDLREQPPKNGSPLDIKLLELPGSFLVGLLGVIVDVPMILLITLWKSPYMLFKGWHRLLHDLIGREGPFLETVCVPFAGLAILLWPLVVIAAVLSAFVSSFFLGFYAAVVVYQESSIKLGLAYVVSAIALFDEYSNDFLYMQEGSCFPRPKYRSQSMPLSGTLSRRYSLGKDGSYGRSGSISPGNKMSGPQRTKSLKKNIQEMKPLQMWDHLFESSECNGKTLVEENVIKISDIEEWNRTAKCKILSVGLPAYSILQNLICSAKNDSAGFMFTDGTEITAISRTEDRLFEWFFEPLMIIKEQIKAXXXXXXXXXXXXXXVLLSGFPDRMKAWQNGGIPPADDVXXXXXXXXXXXXXGIAGSISIMPTFRRRFQHVVKNLHPXXXXXXXXXXXXXXXXXXXNISDGGSKSRNRIGRLFSQKSGGRKEHTSDITRQEINRYNDEGI
B8LKD0______________MDIPSGFPATLWSFLSFLPFFILLFLLGIIKGAIFCPVVWLVITIGNSAVIFGLWPAHVIWTYVCVVRAKRLGPNLKAVLCIGLPVPLILWPLVGLTGSILVGLGYGLFTPLVATFEAIGEEHENxxxDCILKGTWSTVKGSFTVVRDVTDTCFHSYFSLMDDLREQPPKNGSPLDIKLLELPGSLLVGLLGVIVDVPMIVLIALWKSPYMLLKGWHRLVHDLIGREGPFMETVCVPFAGLAILLWPLVVIAAVLSAFVSSFFLGFYAAVVVYQESSIKLGLAYVVSALALFDEYANDFLYMREGSCFPRPKYRSQNMPLSGTLSRRYSLSKEGSNGKSGSISPGNEMPGPQRSKSLKKSIQEMKTMQMWDHLFESYERYGRNLVGDNIIKLSDIEEWNHTAKCKILSVGLPAYSILQNLLCSAKHDSAGFRFTDGTEITAMNRTGDRLFEWFFEPLMIIKEQIKAEQLEESEELYLSKLVLLSGFPDRMKAWQNGGIPPPDDVRRAELEALSRRLQGIAASISIMPTFRRRFQNVVRNLHPVAVESVSSSVHSQGSIAESNISEVGSKSRNRISRLFSQKSGGRKEHSSDMTMQERNRYNDEAV

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
1206	33		66		1.0
1499		20		80	0.995493
1504	80		20		0.995493
1541		25		75	0.996473
1558	25		75		0.996473
1652	75		25		0.996473
1736		20		80	0.995493
1737		20	80		0.995493
1738	80			20	0.995493
1741			20	80	0.995493
1743	80			20	0.995493
1746	80			20	0.995493
1747		20	80		0.995493
1751			80	20	0.995493
1752		20	80		0.995493
1763	25		75		0.996473
1811	66		33		0.997452
1849			25	75	0.996473
1850	75		25		0.996473
1851		75	25		0.996473
1869	85			14	0.993533
1870			85	14	0.993533
1898	83			16	0.994512
1907		16		83	0.994512
1912	33		66		1.0
1925		83	16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain