SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2586

Length: 843 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene2586 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	STYLOSA protein n=1 Tax=Antirrhinum majus RepID=Q6H976_ANTMA	-	-	53%
FL-Next	sp=Transcriptional corepressor LEUNIG; Arabidopsis thaliana (Mouse-ear cress).	-	-	54%
Blast2go	protein	-	-	67%

Source	GOs	Term	Type	Identity
Blast2go	flower development	GO:0009908	Biological Process	67%
Blast2go		GO:0016481	Biological Process	67%
Blast2go	protein heterodimerization activity	GO:0046982	Molecular Function	67%
Blast2go	nucleus	GO:0005634	Cellular Component	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Sequence-specific single-strand DNA-binding protein	IPR008116	-	0.0	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FUY2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 480 aas, your sequence is shorter than subject: 275 - 931

Fln protein: MGRDGGHLLNGSANGLVGNDSLIRQNQGTANAMATKMYEERLKLPHQRDSMDDGSMKRFGDNVGQLLDANQTNILKSATTPGQPSGQVLHNTAGNMAAALQQVQARNQQLPVATQDIKTEMNSVLSQRSGTSDASLFGVPGAGHSKPNLLSPGANQGGNNLPLKGWPLTGLDQLRPGLLATQKSFIQSPQQYHQIQMLTPQQQQLLLQAQAQGNLTSAPCSNFGDMESRRLRMLLSNRNAVAGKDGQTNAVGDMTQNVGSPLPRPEADMILKMK*

Protein Length: 276

Fln nts: ATGGGCAGAGATGGGGGACATCTTTTAAATGGTTCTGCCAATGGATTAGTTGGTAATGATTCTCTTATCCGACAAAACCAGGGGACAGCAAATGCCATGGCAACAAAGATGTATGAGGAACGTCTAAAGTTACCGCATCAGAGAGATTCCATGGACGATGGATCGATGAAGAGGTTTGGAGACAATGTTGGTCAGCTACTGGATGCAAACCAAACAAATATACTGAAGTCAGCAACCACACCTGGGCAGCCTTCGGGGCAAGTTTTACATAATACAGCAGGTAATATGGCTGCTGCTCTTCAGCAGGTTCAGGCTCGTAACCAACAACTTCCTGTGGCCACACAGGACATCAAAACCGAGATGAACTCGGTACTAAGTCAGAGATCTGGCACTTCAGATGCTTCATTATTTGGAGTACCTGGAGCTGGCCATTCAAAACCAAATTTATTAAGCCCAGGTGCAAATCAAGGAGGAAATAACCTACCTTTGAAGGGCTGGCCCCTGACAGGTCTTGACCAACTTCGACCAGGACTTCTAGCAACACAGAAATCTTTCATTCAATCTCCACAGCAATATCATCAGATTCAGATGTTAACTCCGCAGCAACAACAGCTTTTGCTCCAAGCACAAGCCCAAGGAAATCTGACGTCTGCACCATGCTCTAATTTTGGTGATATGGAAAGCAGAAGACTTCGGATGCTTCTGAGTAACAGGAATGCTGTTGCAGGCAAAGATGGCCAAACTAATGCTGTTGGTGACATGACCCAGAATGTTGGGTCTCCACTGCCACGACCTGAAGCAGACATGATATTGAAGATGAAATAGCTCAAATTCAACAACAGC

Fln Alignment:

sp_v1.1_unigene2586___RDGGHLLNGSANGLVGNDS--LIRQNQGTANAMATKMYEERLKLPHQRDSMDDGSMKRFGDNVGQLLDANQTNILKSATTPGQPSGQVLHNTAGNMAAALQQVQARNQQLPVATQDIKTEMNSVLSQRSGTSDASLFGVPGAGHSKPNLLSPGANQGGNNLPLKGWPLTGLDQLRPGLLATQKSFIQSPQQYHQIQMLTPXXXXXXXXXXXQGNLTSAPCSNFGDMEXXXXXXXXXXXNAVAGKDGQTNAVGDMTQNVGSP-------LPRPEADMILKMK
Q9FUY2______________RDGSHLANGSANGLVGNNSEPVMRQNPGSGSSLASKAYEERVKMPTQRESLDEAAMKRFGDNVGQLLDPSHASILKSAAASGQPAGQVLHSTSGGMS---PQVQTRNQQLPGSAVDIKSEINPVLTPRTAVPEGSLIGI------------PGSNQGSNNLTLKGWPLTGFDQLRSGLLQQQKPFMQS-QSFHQLNMLTPQHQQQLMLAQQ--NLNSQSVSE----ENRRLKMLLNNRSMTLGKDGLGSSVGDVLPNVGSSLQPGGSLLPRGDTDMLLKLK

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
562	20			80	0.995493
566	20	80			0.995493
570	20			80	0.995493
574	20			80	0.995493
579			20	80	0.995493
580	80	20			0.995493
581	80			20	0.995493
582	80		20		0.995493
732	83		16		0.994512
781	83	16			0.994512
782		16	83		0.994512
784			83	16	0.994512
807	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain