SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2575

Length: 736 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene2575

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CAND1; CAND1 (CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED); binding	-	-	43%
FL-Next	Isoform 2 of Cullin-associated NEDD8-dissociated protein 1 OS=Arabidopsis thaliana GN=CAND1	-	-	62%
Blast2go	protein	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	80%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	80%
Blast2go	xylem and phloem pattern formation	GO:0010051	Biological Process	80%
Blast2go	protein binding	GO:0005515	Molecular Function	80%
Blast2go	plasma membrane	GO:0005886	Cellular Component	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Armadillo-like helical	IPR011989	-	0.0	80%
Blast2go	Armadillo-type fold	IPR016024	-	0.0	80%

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
243	80			20	0.995493
244	80		20		0.995493
253		20		80	0.995493
275			40	60	1.0
692			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain