SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2504

Length: 1556 nt

Origin of reads: Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene2504 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Copalyl diphosphate synthase n=1 Tax=Abies grandis RepID=TPSDV_ABIGR	-	-	78%
FL-Next	sp=Levopimaradiene synthase, chloroplastic; Picea abies (Norway spruce) (Picea excelsa).	-	-	79%
Blast2go	e-alpha-bisabolene synthase	-	-	80%

Source	InterPros	Term	Type	Identity
Blast2go	Terpene synthase-like	IPR001906	-	80%
Blast2go	Terpene synthase, metal-binding domain	IPR005630	-	80%
Blast2go	Terpenoid cylases/protein prenyltransferase alpha-alpha toroid	IPR008930	-	80%
Blast2go	Terpenoid synthase	IPR008949	-	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q675L4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 213 aas, your sequence is shorter than subject: 518 - 859

Fln protein: RMTLLG*QSIPALDGSDHPHFPQTLQWILQNQLQDGSWGEDNHFLRYDRVLATLACIITLTVWRTGQIQVQKGLEFFKKHAEMMEDEADNHRPSGFEIVFPAMLNQAKQLCLDLPYELPFIKQIIKKAEAKLKRIPTDTLYTVPTIYLYYLEGLQEIVEWPRIIKLQSKDGSFLGSPASTAAVFMRTGNTKCLEFLNLVLTKFGNHVPCHYPLNLFERLWAIDTVERLGIDRHFKKEIKHALDYVYSHWNERGIGWARENHVADIDVTAMGLRILRLHGYNVSADVLKTFRDENGEFFRFSGQTERGVTDMLSLNRCSHVAIPGETVMEEAQLCTERYLWSTLENVDAFDKWALKKNIRGEVEYALRHPWHRSLPRLEARSYIQHYGSNDVWLGKTMYMMPYINNRKYLELAKLDFNYVQSIHQKEIHELRRWWKSSGFAELNFTRDRVTEIFFSIASSLFEPELASCRAIYTKSTILIVILDDLYDAHASLEDIKLFTEAVKRWDLFLLDRMPEHNN

Protein Length: 519

Fln nts: TGCGTATGACACTGCTTGGGTAGCAAAGTATTCCAGCACTTGATGGCTCTGACCACCCTCACTTTCCTCAAACACTCCAATGGATTCTTCAGAATCAGCTGCAAGATGGCTCTTGGGGCGAAGACAACCATTTCCTAAGATATGACAGAGTACTCGCTACTCTTGCGTGTATTATTACCCTCACCGTATGGCGCACTGGCCAGATACAAGTGCAGAAAGGTCTTGAATTCTTCAAGAAACACGCTGAAATGATGGAGGATGAAGCGGACAATCACCGGCCGAGTGGATTCGAAATTGTCTTTCCTGCTATGCTAAACCAAGCAAAACAATTATGCTTGGATCTGCCTTATGAGTTGCCATTCATTAAACAAATCATTAAGAAGGCGGAAGCTAAGCTTAAAAGGATTCCCACTGACACTCTCTATACGGTTCCAACAATATACTTGTATTATTTGGAAGGCCTGCAAGAAATAGTGGAGTGGCCCAGAATCATCAAACTTCAATCAAAGGATGGATCGTTCCTCGGCTCGCCAGCATCTACAGCCGCTGTATTCATGCGTACAGGGAACACCAAGTGCTTGGAATTCTTGAACTTGGTCTTAACGAAATTCGGAAACCACGTGCCGTGTCACTATCCGCTTAATCTATTTGAACGGCTGTGGGCCATTGATACTGTTGAACGGTTAGGGATCGATCGCCATTTCAAAAAGGAAATCAAGCACGCATTGGATTATGTTTACAGCCATTGGAACGAAAGAGGCATTGGATGGGCGAGAGAGAATCATGTTGCTGATATTGATGTTACAGCCATGGGACTTCGAATCTTGAGACTGCATGGATACAATGTATCCGCAGATGTTTTAAAAACTTTTAGAGATGAGAATGGGGAGTTCTTTCGCTTCTCGGGTCAAACGGAGAGAGGAGTAACAGACATGTTAAGCCTCAATCGTTGCTCACACGTTGCGATACCAGGAGAAACGGTCATGGAAGAAGCACAACTCTGTACCGAAAGATATCTGTGGAGCACTCTGGAAAATGTGGATGCGTTTGACAAATGGGCTCTTAAAAAGAACATTCGCGGAGAGGTGGAGTACGCCCTCAGACATCCATGGCATAGGAGTCTGCCAAGGCTGGAGGCTAGAAGCTACATTCAACATTATGGGTCAAATGATGTCTGGCTTGGGAAAACTATGTATATGATGCCATATATTAACAACCGAAAATACTTGGAACTGGCCAAACTGGACTTCAATTATGTGCAGTCCATACACCAAAAAGAGATTCACGAACTTCGAAGGTGGTGGAAGTCATCCGGTTTCGCGGAGCTCAATTTCACACGCGACCGTGTGACTGAAATATTTTTCTCAATCGCGTCTTCCCTGTTTGAACCAGAGCTCGCTTCGTGTAGAGCCATTTATACGAAATCTACCATCTTGATTGTCATTTTAGACGACCTATATGACGCACATGCATCTTTAGAAGACATCAAGCTGTTCACAGAAGCAGTTAAAAGATGGGATCTGTTTCTGTTAGACCGAATGCCAGAACACAATAAC

Fln Alignment:

sp_v1.1_unigene2504___IPALDGSDHPHFPQTLQWILQNQLQDGSWGEDNHFLRYDRVLATLACIITLTVWRTGQIQVQKGLEFFKKHAEMMEDEADNHRPSGFEIVFPAMLNQAKQLCLDLPYELPFIKQIIKKAEAKLKRIPTDTLYTVPTIYLYYLEGLQEIVEWPRIIKLQSKDGSFLGSPASTAAVFMRTGNTKCLEFLNLVLTKFGNHVPCHYPLNLFERLWAIDTVERLGIDRHFKKEIKHALDYVYSHWNERGIGWARENHVADIDVTAMGLRILRLHGYNVSADVLKTFRDENGEFFRFSGQTERGVTDMLSLNRCSHVAIPGETVMEEAQLCTERYLWSTLENVDAFDKWALKKNIRGEVEYALRHPWHRSLPRLEARSYIQHYGSNDVWLGKTMYMMPYINNRKYLELAKLDFNYVQSIHQKEIHELRRWWKSSGFAELNFTRDRVTEIFFSIASSLFEPELASCRAIYTKSTILIVILDDLYDAHASLEDIKLFTEAVKRWDLFLLDRMPE
Q675L4______________IPAVDGSEQPEFPETLEWILQNQLKDGSWGEGFYFLAYDRILATLACIITLTLWRTGEIQVQKGIEFFKTQAGKIEDEADSHRPSGFEIVFPAMLKEAKVLGLDLPYELPFIKQIIEKREAKLERLPTNILYALPTTLLYSLEGLQEIVDWQKIIKLQSKDGSFLSSPASTAAVFMRTGNKKCLEFLNFVLKKFGNHVPCHYPLDLFERLWAVDTIERLGIDRHFKEEIKDALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVAFPGETIMEEAKTCTERYLRNALEDVGAFDKWALKKNIRGEVEYALKYPWHRSMPRLEARSYIEHYGPNDVWLGKTMYMMPYISNEKYLELAKLDFNHVQSLHQKELRDLRRWWTSSGFTELKFTRERVTEIYFSPASFMFEPEFATCRAVYTKTSNFTVILDDLYDAHGTLDDLKLFSDSVKKWDLSLVDRMPQ

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
255			33	66	0.997452
256	33	66			0.997452
257	33	66			0.997452
259		66		33	0.997452
262		66		33	0.997452
263		66		33	0.997452
1416	28		71		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain