SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2383

Length: 2531 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene2383
CGTCGTGACCTTGGCTGTGATGGATGGGTGTACAGAAGGGCGATTGTTATGGAATCAGTTTGGCGTTGGCGTTAGGGCAAAGCCGAACCAAAGGAAAACACCCGCCAGCAAATCTCCACATTTATTGAGAGCCCAGGGTTTTGAAACCGCGTGGGAAACGTAAAGCATTTGCAGACAATCGAGTCGGTTGAAATCCGGTGCCGTTTGACGTGGTTTGCGCGAAATTTGTTGAACGGCTGAATAAGGTTCACATCTCCGAGTTATAATTAAGATGTAGGCTTCACAGGGTCTGGTGAATGCTGGCCGAAATCGCTGGATTTGCTCAGTTTTCTTCTTTCAATCAGGGTTTTGACCCTGGTCGAATGTCATCGCCACTGCCAGACATAATTTCTACAAGTTTTGAAGTGTGCCACGTGTCATTATCTGTTAATATGGTGGCAATAGTGTTGATTTACAATCTGGATTGAACTGGGCTCAATGCATTGCTCATGCACAGTGGGATTTTTTAGCTTTAAGATTTTGTGAGGCTAATCGCGACAAGTGCTGTCACTTGTTCTTTGGAGACACTGCATTATTCTTTTTGAGGGAAGGCATGGTGGGTAGAAAAATTGAAGAAGCTGGGCCTAAAATTTTTCGATGTGAAACTGTTTGTGGCGACGGGATTGAATGCGAACGCGAAGCCAGTGATGGTAAACTTGAGAAGACGGCAAAAAGGGCATTTGTTGGTGCTGGGGCACGTGTTCTTTTTTACCCAACGCTCTTATATAATGTTGTGCGGAACAAGCTTCAGCCAGAGTTTAGGTGGTGGGATCAGATTGACCAGTTTCTTCTTTTAGGTGCTGTACCATTTCCTAAAGATGTTCATCGCTTGAAGGAGTTAGGTGTAGAAGCTGTTGTCACCCTAAATGAACCATATGAAACTTTGGTGCCAACCTCTATGTACCAGGATGAAGGCATCAAGCACCTGGTCATCCCAACTAGAGATTATCTTTTTGCTCCTTCGTTTGATGATATTTGTCAAGCTGTGGACTTTATTCATGAGCATGTGAAAAGTGGGAAGACAACATATGTTCATTGTAAAGCTGGACGAGGGCGTAGTACAACTATTGTTCTCTGTTATCTGGTTGAACACAAAGGAATGAGTCCAGTTGACGCATATGCATATGTAAGGTCAAAAAGACCAAGGGTTCTACTAGCAGCTTCCCAGTGGCAGGCAGTGCAGGAGTACACTAAGCAGAGGCACAGGGATATTAACAAGATTGTTGCTTCTACTGGGTCATCTAGGACATTTAATTGCCCTGTGTCACTGGCCATATCTCAGAAGCTGGTTACACCCGCTGGCAGAGAGAGAATTTTTAGTTATGATGATTCAATTGTATTTGTGACAAATGCTGATTTGGATGGATACAAAAGTAGTTAGGACATCTGTCTCGTGGAAATAGATGATAGAGGAACTTGGGATGGTATGATGGTGTTGCAAGATGTGTCGTGTAGTGATGAACTCCGTTGCTATACACCCAAGGCCGTCTGGTATTCAGAATAAGCTTTCAAGCGGAAACAGAAATAGGGCAAATATTTAGTGCACAGCATTCCAGGTCTCTTCAAATACCTTGGGTGGTATGTGGCTATTTGCTAGATTGCAGAGCAAGCAATATGGTGCAGGTAGATGTTCCTATATGCCACAACAGAGTAATTAAATATTATACAAGCACTTGATTACAGCAGGCAGGTAACTTTTTTGATCGGCCTCCAGTCAAATTAAATGTTTAAATTGGCTGTCAATATTTTGTCTTTGCAATGCTGCTTTTTAAAAGCTATTTCCCTCCCTTTGCCTAGAATAACACCAGTCGCAAACAAAACATAAGGGATAGTGACACAAGTTATTGACGTGAAGGAGGGCTTTTGCAGCCTTCTGGGGTTTGCTCTGTGCTCCTTTAGGAACGACTGAATTGATATTTCGAAGTCAGTCCACAATAAGCCAAGGAAGAGACTTTGCCTATAGGGATCTTATAAACATGAGGTGTCCTTTCAGGGAGGGGAAGAGTGTGAGAGGGACAATGAGCAGGATGGAAAAAGTAGATAGGATTGATCATTGTTCTGGCCAAACAGAAACGGAAAATAGCCGACTGATGAGTCGTATATTTTTCAAATTGAAAACACACGAACAGAAAGATGGGGATGATATTCAAGTGGAAGTGTATGTTGTATGGTTTGCTTATATTCTGATGTGAAATTTGTATGTTAGCGGGATATATCTTAATGAGGTTAAGATTCCTGTAGAAGTCCGAGTACAGGTCTCTCGAGATGATTCCCTATAAATGCTTCTTTGTGGTTCACTGTAAGGGTGAGAATCATAGATAATACTAAAAACACTGACATGGATGCCCTCTTAATTAGTGTTCATGCATGACTCACGGTGTGGCATATTCTTTTCTGTATCCATCCATGAATATTTTGTAGATCTGTTGTTGGATCTAATATGTTACAGTAAGATTTCTGTATCGAGTATTTTGACTTTAAAATAATCATTA

Ace file of the UniGene sp_v1.1_unigene2383

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein-tyrosine phosphatase mitochondrial 1, mitochondrial precursor, putative (EC:3.1.3.16)	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein-tyrosine phosphatase mitochondrial mitochondrial	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	71%

Source	InterPros	Term	Type	Identity
Blast2go	Dual specificity phosphatase, catalytic domain	IPR000340	-	71%
Blast2go	Protein-tyrosine/Dual-specificity phosphatase	IPR000387	-	71%
Blast2go	Protein-tyrosine phosphatase, catalytic	IPR003595	-	71%
Blast2go	Protein-tyrosine phosphatase, active site	IPR016130	-	71%
Blast2go	Dual specificity phosphatase, subgroup, catalytic domain	IPR020422	-	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUV5

Fln msg:

Fln protein: MVGRKIEEAGPKIFRCETVCGDGIECEREASDGKLEKTAKRAFVGAGARVLFYPTLLYNVVRNKLQPEFRWWDQIDQFLLLGAVPFPKDVHRLKELGVEAVVTLNEPYETLVPTSMYQDEGIKHLVIPTRDYLFAPSFDDICQAVDFIHEHVKSGKTTYVHCKAGRGRSTTIVLCYLVEHKGMSPVDAYAYVRSKRPRVLLAASQWQAVQEYTKQRHRDINKIVASTGSSRTFNCPVSLAISQKLVTPAGRERIFSYDDSIVFVTNADLDGYKSS*

Protein Length: 277

Fln nts: CGTCGTGACCTTGGCTGTGATGGATGGGTGTACAGAAGGGCGATTGTTATGGAATCAGTTTGGCGTTGGCGTTAGGGCAAAGCCGAACCAAAGGAAAACACCCGCCAGCAAATCTCCACATTTATTGAGAGCCCAGGGTTTTGAAACCGCGTGGGAAACGTAAAGCATTTGCAGACAATCGAGTCGGTTGAAATCCGGTGCCGTTTGACGTGGTTTGCGCGAAATTTGTTGAACGGCTGAATAAGGTTCACATCTCCGAGTTATAATTAAGATGTAGGCTTCACAGGGTCTGGTGAATGCTGGCCGAAATCGCTGGATTTGCTCAGTTTTCTTCTTTCAATCAGGGTTTTGACCCTGGTCGAATGTCATCGCCACTGCCAGACATAATTTCTACAAGTTTTGAAGTGTGCCACGTGTCATTATCTGTTAATATGGTGGCAATAGTGTTGATTTACAATCTGGATTGAACTGGGCTCAATGCATTGCTCATGCACAGTGGGATTTTTTAGCTTTAAGATTTTGTGAGGCTAATCGCGACAAGTGCTGTCACTTGTTCTTTGGAGACACTGCATTATTCTTTTTGAGGGAAGGC_-_ATGGTGGGTAGAAAAATTGAAGAAGCTGGGCCTAAAATTTTTCGATGTGAAACTGTTTGTGGCGACGGGATTGAATGCGAACGCGAAGCCAGTGATGGTAAACTTGAGAAGACGGCAAAAAGGGCATTTGTTGGTGCTGGGGCACGTGTTCTTTTTTACCCAACGCTCTTATATAATGTTGTGCGGAACAAGCTTCAGCCAGAGTTTAGGTGGTGGGATCAGATTGACCAGTTTCTTCTTTTAGGTGCTGTACCATTTCCTAAAGATGTTCATCGCTTGAAGGAGTTAGGTGTAGAAGCTGTTGTCACCCTAAATGAACCATATGAAACTTTGGTGCCAACCTCTATGTACCAGGATGAAGGCATCAAGCACCTGGTCATCCCAACTAGAGATTATCTTTTTGCTCCTTCGTTTGATGATATTTGTCAAGCTGTGGACTTTATTCATGAGCATGTGAAAAGTGGGAAGACAACATATGTTCATTGTAAAGCTGGACGAGGGCGTAGTACAACTATTGTTCTCTGTTATCTGGTTGAACACAAAGGAATGAGTCCAGTTGACGCATATGCATATGTAAGGTCAAAAAGACCAAGGGTTCTACTAGCAGCTTCCCAGTGGCAGGCAGTGCAGGAGTACACTAAGCAGAGGCACAGGGATATTAACAAGATTGTTGCTTCTACTGGGTCATCTAGGACATTTAATTGCCCTGTGTCACTGGCCATATCTCAGAAGCTGGTTACACCCGCTGGCAGAGAGAGAATTTTTAGTTATGATGATTCAATTGTATTTGTGACAAATGCTGATTTGGATGGATACAAAAGTAGTTAG___GACATCTGTCTCGTGGAAATAGATGATAGAGGAACTTGGGATGGTATGATGGTGTTGCAAGATGTGTCGTGTAGTGATGAACTCCGTTGCTATACACCCAAGGCCGTCTGGTATTCAGAATAAGCTTTCAAGCGGAAACAGAAATAGGGCAAATATTTAGTGCACAGCATTCCAGGTCTCTTCAAATACCTTGGGTGGTATGTGGCTATTTGCTAGATTGCAGAGCAAGCAATATGGTGCAGGTAGATGTTCCTATATGCCACAACAGAGTAATTAAATATTATACAAGCACTTGATTACAGCAGGCAGGTAACTTTTTTGATCGGCCTCCAGTCAAATTAAATGTTTAAATTGGCTGTCAATATTTTGTCTTTGCAATGCTGCTTTTTAAAAGCTATTTCCCTCCCTTTGCCTAGAATAACACCAGTCGCAAACAAAACATAAGGGATAGTGACACAAGTTATTGACGTGAAGGAGGGCTTTTGCAGCCTTCTGGGGTTTGCTCTGTGCTCCTTTAGGAACGACTGAATTGATATTTCGAAGTCAGTCCACAATAAGCCAAGGAAGAGACTTTGCCTATAGGGATCTTATAAACATGAGGTGTCCTTTCAGGGAGGGGAAGAGTGTGAGAGGGACAATGAGCAGGATGGAAAAAGTAGATAGGATTGATCATTGTTCTGGCCAAACAGAAACGGAAAATAGCCGACTGATGAGTCGTATATTTTTCAAATTGAAAACACACGAACAGAAAGATGGGGATGATATTCAAGTGGAAGTGTATGTTGTATGGTTTGCTTATATTCTGATGTGAAATTTGTATGTTAGCGGGATATATCTTAATGAGGTTAAGATTCCTGTAGAAGTCCGAGTACAGGTCTCTCGAGATGATTCCCTATAAATGCTTCTTTGTGGTTCACTGTAAGGGTGAGAATCATAGATAATACTAAAAACACTGACATGGATGCCCTCTTAATTAGTGTTCATGCATGACTCACGGTGTGGCATATTCTTTTCTGTATCCATCCATGAATATTTTGTAGATCTGTTGTTGGATCTAATATGTTACAGTAAGATTTCTGTATCGAGTATTTTGACTTTAAAATAATCATTA

Fln Alignment:

sp_v1.1_unigene2383___MVGRKIEEAGPKIFRCETVCGDGIECEREASDGKLEKTAKRAFVGAGARVLFYPTLLYNVVRNKLQPEFRWWDQIDQFLLLGAVPFPKDVHRLKELGVEAVVTLNEPYETLVPTSMYQDEGIKHLVIPTRDYLFAPSFDDICQAVDFIHEHVKSGKTTYVHCKAGRGRSTTIVLCYLVEHKGMSPVDAYAYVRSKRPRVLLAASQWQAVQEYTKQRHRDINKIVASTGSSRTFNCPVSLAISQKLVTPAGRERIFSYDDSIVFVTNADLDGYKSS
A9NUV5______________MVGRKIEESGPKFFQCETVAGDGIECEREVGDGKVEKTAKRAFVGAGARVLFYPTLLYNVVRNKLQPEFRWWDQIDQFLLLGAVPFPKDVHRLKELGVEAVVTLNEPYETLVPTSMYQDEGIKHLVIPTRDYLFAPSFDDICQAVDFIHEHVKSGKTTYVHCKAGRGRSTTIVLCYLVEHKGMGPVDAYAYVRSKRPRVLLAASQWQAVQEYTNQRRRDINKIVASTGSSRTFNCPVSMAISQKLVTPDGRERIFSYDDSLVFVTNADLDGYKSS

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
84		66	33		0.997452
96	75	25			0.996473
97	75			25	0.996473
98	75	25			0.996473
159	25		75		0.996473
188	85			14	0.993533
226		85		14	0.993533
265	22			77	0.999999
358	70		30		1.0
371	25		75		1.0
583		75		25	0.996473
706	75		25		0.996473
1050	87		12		0.992554
1090	87			12	0.992554
1092		87	12		0.992554
1093			12	87	0.992554
1492		10		90	0.90298
1833		87		12	0.992554
1872		14		85	0.993533
2037		20		80	0.999996
2195		5	11	76	0.999894
2199	85	10	5		0.999793
2204	90	10			0.999898
2205	89	10			1.0
2206		10	89		1.0
2210	89	7	3		0.998606
2216		7		92	0.999664

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain