SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene2319

Length: 1253 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene2319 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	QQT1 (QUATRE-QUART 1); ATP binding / nucleotide binding [Arabidopsis thaliana] ref\|NP_001119261.1\| QQT1 (QUATRE-QUART 1); ATP binding / nucleotide binding [Arabidopsis thaliana] dbj\|BAD94895.1\| putative protein [Arabidopsis thaliana]	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	36%
Blast2go	atp binding domain 1 family member b	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	embryo development	GO:0009790	Biological Process	85%
Blast2go	cell division	GO:0051301	Biological Process	85%
Blast2go	microtubule	GO:0005874	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Uncharacterised protein family, ATP binding	IPR004130	-	0.0	85%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKZ3

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 231 - 269

Fln protein: S*PWLSLIYCMDYLEKNIDWLQSKLERRDLGCHSFLFDFPGQVELFTLHSNAKNIILEMTRKMEYRLAAVHLVDAHLCSEPGKYISALLLSLTTMLHLELPHINVLSKMDLIESYGKLAFNLEFYTDVQDLSYLQQYLDQDPRSAKYRKLTKALCEMIEDFSLVSFATLDIQDKESVGNLVKLIDKANGYVFAGIEGDIVEFSKIAAAPLDWDYYRTAAVQEKYMKDDDD*

Protein Length: 232

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTATTGCATGGATTACCTGGAAAAGAATATTGACTGGTTGCAGTCTAAGCTAGAACGTCGTGACCTTGGCTGTCACTCATTCCTTTTTGACTTTCCGGGGCAGGTTGAGCTCTTCACTCTTCATTCAAATGCCAAGAATATTATTCTTGAAATGACGAGAAAGATGGAATATAGACTCGCAGCAGTCCACTTAGTTGATGCTCATCTTTGTAGTGAACCTGGGAAATATATTAGTGCTCTGTTGCTGTCTTTGACAACAATGTTGCATTTAGAGCTGCCACATATTAATGTATTGTCCAAGATGGATCTTATTGAGAGTTATGGAAAACTCGCTTTCAATTTAGAATTCTACACAGATGTGCAAGACCTGTCATATTTACAACAATATCTAGATCAGGATCCTCGTTCTGCTAAGTACAGAAAACTTACCAAGGCATTGTGTGAGATGATTGAAGACTTTTCCTTGGTTAGTTTTGCAACCTTGGACATCCAGGACAAGGAGAGTGTTGGGAATCTTGTTAAGCTTATCGATAAAGCAAATGGATATGTCTTTGCTGGCATTGAAGGAGATATTGTTGAGTTTAGCAAAATTGCAGCTGCACCCTTGGACTGGGATTATTACAGAACTGCAGCTGTACAGGAGAAGTATATGAAAGATGACGACGACTAA___TTACAAATCAGGCCTGTTTAAAGATATCACTCTGAGACGTCTTTGCATTAACTGTAAAGCTGCTCAAGATGCATTCAAGACATGAACTGTTGGCATTCTTGTGGCAATCCAACTCATGTGGCCTGTGGGTGCTCTGGTCATCAGGCATCTTACACATCTTTTCTCAAATTCTTGACATTTCTAATTGCTATCAAGGTGCTCTGTCACATTCTTCAGTTCTGAAACAGAGGCTATTCTGTTAAATCTGTTTCCTTATTTCCTGTTGACAAACAAATTCTTGTTGTATTGATGTTAGCTGAGCAAAGGCACTGATTTTAAATGTATCGGGACTATCTTTTCTCCATTTCAGATTTGATGCCTTCAGAATAGACTGGCATACCAATTGTCTAGCTTGCTGCTAGTGGTTTTGGACATTTGTTTCATAGTTCATGCAAAATTCTCCATGGGTTTGTATTTCTTGATTGGACAATATGATTCCAACATGGCTGACTGATGGATTGCTGATTTGTACATATTCTAACTTCTAAGACATTGTTTACTTTTATTGTAAGTAGAACT

Fln Alignment:

sp_v1.1_unigene2319___LIYCMDYLEKNI-DWLQSKLERRDLGCHSFLFDFPGQVELFTLHSNAKNIILEMTRKMEYRLAAVHLVDAHLCSEPGKYISAXXXXXXXXXXXXLPHINVLSKMDLIESYGKLAFNLEFYTXXXXXXXXXXXXXXDPRSAKYRKLTKALCEMIEDFSLVSFATLDIQDKESVGNLVKLIDKA
B8LKZ3______________LIYCMEHLEENLEDWLAEQLEDY-LDDDYLVFDCPGQIELYS-HIPVFRTFVDQLRRWNYNVCAVYLLDSQFVSDITKYLSGCMASLSAMVQLELPHVNVLTKMDLVTNKKEIE---KFLDPDTRLLIADLNEHMAPR---FAKLNKALAELLDDYNMVNFLPLDIKKENSMQYILSQIDNA

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1154			33	66	0.997452
1155			66	33	0.997452
1163			66	33	0.997452
1165		66		33	0.997452
1166	66			33	0.997452
1167	66			33	0.997452
1168			66	33	0.997452
1173	33	66			0.997452
1176		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain